View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0756_low_4 (Length: 452)
Name: NF0756_low_4
Description: NF0756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0756_low_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 117 - 452
Target Start/End: Original strand, 7470654 - 7470989
Alignment:
| Q |
117 |
aacctgtgtagaagaggcgacttggcaaatgctccaaatgaaaaaatatattttaagcacaactcaccactagctttggcagctaacgtatgataaacat |
216 |
Q |
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| T |
7470654 |
aacctgtgtagaagaggcgacttggcaaatgctccaaatgaaaaaatatattttaagcacaactcaccactagctttggcagctaacgtatgataaacat |
7470753 |
T |
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| Q |
217 |
aatcttcaatatgnnnnnnncaccaattagaaatatgttcttacaactaaggcacatcgatgagctatctctctgtacctgttagtaatttcgattcaga |
316 |
Q |
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| T |
7470754 |
aatcttcaatatgaaaaaaacaccaattagaaatatgttcttacaactaaggcacatcaatgagctatctctctgtacctgttagtaatttcgattcaga |
7470853 |
T |
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| Q |
317 |
ttctgtcaaaagctccccagttgagtatttgacaaacctagcacttgtatacctgctgactaaatcaggaccccaaggacctaaacctctgcggaaaaat |
416 |
Q |
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| T |
7470854 |
ttctgtcaaaagttccccagttgagtatttgacaaacctagcacttgtatacctgctgactaaatcaggaccccaaggacctaaacctctgcggaaaaat |
7470953 |
T |
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| Q |
417 |
acatgtagaaaaatattaaacagagacagttttata |
452 |
Q |
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| T |
7470954 |
acatgtagaaaaatattaaacattgacagttttata |
7470989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 27296083 - 27295981
Alignment:
| Q |
7 |
gaccagggcatggaatcagcatcggaggtctaggaaaggataatactagagcctgtgtctcaaacatcactgtcagggatgtcaacatgcataacacagt |
106 |
Q |
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| T |
27296083 |
gaccagggcatggaatcagcatcggaggtctaggaaaggataatactagagcctgtgtctcaaacatcactgtcagggatgtcaacatgcataacacaat |
27295984 |
T |
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| Q |
107 |
gaa |
109 |
Q |
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| T |
27295983 |
gaa |
27295981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 141 - 227
Target Start/End: Original strand, 52871029 - 52871115
Alignment:
| Q |
141 |
gcaaatgctccaaatgaaaaaatatattttaagcacaactcaccactagctttggcagctaacgtatgataaacataatcttcaata |
227 |
Q |
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| T |
52871029 |
gcaaatgctccaaatgcaaaaatatattttaaacacagctccccactagctttggccgccaatgtatgataaacataatcttcaata |
52871115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 408
Target Start/End: Original strand, 52871247 - 52871306
Alignment:
| Q |
349 |
caaacctagcacttgtatacctgctgactaaatcaggaccccaaggacctaaacctctgc |
408 |
Q |
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| T |
52871247 |
caaacctagcacttgtatatttgcggaccatgttaggaccccaaggacctaaacctctgc |
52871306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 14738598 - 14738677
Alignment:
| Q |
15 |
catggaatcagcatcggaggtctaggaaaggataatactagagcctgtgtctcaaacatcactgtcagggatgtcaacat |
94 |
Q |
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| T |
14738598 |
catggaatcagcattggaagtttaggaaaagataacaccagagcctgtgtctcaaacattactgtcagagatgtcaacat |
14738677 |
T |
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