View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0756_low_9 (Length: 376)

Name: NF0756_low_9
Description: NF0756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0756_low_9
NF0756_low_9
[»] chr3 (2 HSPs)
chr3 (198-376)||(1095705-1095883)
chr3 (30-181)||(1095562-1095721)
[»] chr2 (1 HSPs)
chr2 (228-355)||(21715196-21715323)


Alignment Details
Target: chr3 (Bit Score: 171; Significance: 9e-92; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 198 - 376
Target Start/End: Original strand, 1095705 - 1095883
Alignment:
Q  198 aagattgtcttcatatgtagtttctagttatcttagatttcgagtgatgtcttatattcctaggacgaatttagaagattgtattttgtctgtatagttt 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1095705 aagattgtcttcatatgtagtttctagttatcttagatttcgagtgatgtcttatattcctaggacgaatttagaagattgtattttgtctgtatagttt 1095804  T
Q  298 aggacttaatctcaccttgcacaaaacatattgtgcttgtataaaaactttgctaagtatcatttctcaaagcttgttt 376  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  1095805 aggacttaatctcaccttgcacaaaacatattgtgcttgcataaaaactttgctaagtatcatttttcaaagcttgttt 1095883  T

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Target: chr3; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 30 - 181
Target Start/End: Original strand, 1095562 - 1095721
Alignment:
Q  30 gttggttaaatgggactgcctctatttttgaattggaaagtgggaacgcttc-tttaacatatttggggttgtc-------aatattggtgataattctt 121  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||       |||||||||||||||||||    
T  1095562 gttggttaaatgagactgcctctatttttgaattggaaagtggggacgcttcctttaacatatttggggttgtcaaatgtcaatattggtgataattctt 1095661  T
Q  122 gcaaattatcattttaaaatccaatatttgatggtataagagaaagattgtcttcatatg 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1095662 gcaaattatcattttaaaatccaatatttgatggtataagagaaagattgtcttcatatg 1095721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 228 - 355
Target Start/End: Original strand, 21715196 - 21715323
Alignment:
Q  228 tcttagatttcgagtgatgtcttatattcctaggacgaatttagaagattgtattttgtctgtatagtttaggacttaatctcaccttgcacaaaacata 327  Q
    |||||| ||| |||||||||||||||||||| |||    |||||||||||||||||||| | | || | ||||||| | |||||||||||  ||||||||    
T  21715196 tcttaggttttgagtgatgtcttatattcctcggatagttttagaagattgtattttgtttctctattgtaggactaattctcaccttgcttaaaacata 21715295  T
Q  328 ttgtgcttgtataaaaactttgctaagt 355  Q
    || |||||| |||||| |||||||||||    
T  21715296 ttttgcttgcataaaatctttgctaagt 21715323  T

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