View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0757-INSERTION-1 (Length: 673)
Name: NF0757-INSERTION-1
Description: NF0757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0757-INSERTION-1 |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 8 - 398
Target Start/End: Original strand, 25105041 - 25105432
Alignment:
| Q |
8 |
ccaagttcctcttaaa-tgcctatgacagatcacagatcagagtgaaactttttgtagggttctctagggtattatttcctcaaaccttctaaatgttat |
106 |
Q |
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| T |
25105041 |
ccaagttcctcttaaaatgcctatgacagatcgcagatgagagtgaaactttttgtagggttctctagggtattatttcctcaaaccttctaaatgttat |
25105140 |
T |
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| Q |
107 |
tctgcattgtatatctttttcttctcttaacataaatgaaaccctctctccccaacctctttgttctttgtcttttaagattaggatacaagatcaaaga |
206 |
Q |
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| T |
25105141 |
tctgcattgtatatctttttcttctcttaacataaatgaaaccctctctccccaacctctttgttctttgtcttataagattaggatacaagatcaaaga |
25105240 |
T |
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| Q |
207 |
tggtgtctcctcaagaagttggattctcttggtttttatcaaatgccaccccttaaaatgatttccattacgttcctaattgtattttagacatacatta |
306 |
Q |
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| T |
25105241 |
tggtgtctcctcaagaagttggattctcttggtttttatcaaatgccaccccttaaaatgatttccattacgttcctaattgtattttagacatacatta |
25105340 |
T |
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| Q |
307 |
tcatactttcaccatatatattaccctaactttctcaacaattaaaaaccatattgcattgaaacttgtcaaaatgctgtgataatcatcat |
398 |
Q |
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| T |
25105341 |
tcatactttcacaatatatattaccctaactttctcaacaattaaaaaccatattgcattgaaacttgtcaaaatgctatgataatcatcat |
25105432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 466 - 656
Target Start/End: Original strand, 25105498 - 25105688
Alignment:
| Q |
466 |
tggaagtttcacctcaatgctagagaaaagagaagaatgaaatgggtgccacaatttccacgctttacctgtgatttgcatcttcannnnnnnnnnnnnn |
565 |
Q |
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| T |
25105498 |
tggaagtttcacctcaatgctagagaaaagagaagaatgaaatgggtgcctcaatttccacgctttacctgtgatttgcatcttccttttttcttttctt |
25105597 |
T |
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| Q |
566 |
nnnnattacatattttgttgttacgtgcatttctttcaatttgagacatggcaatccgtccattactatacttttagcgtataaatgtcta |
656 |
Q |
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| T |
25105598 |
ttttattacatattttgttgctacgtgcatttctttccattttggacatgccaatccgtccattactatacttttagtgtataaatgtcta |
25105688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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