View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0757-INSERTION-2 (Length: 666)
Name: NF0757-INSERTION-2
Description: NF0757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0757-INSERTION-2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 559; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 8 - 666
Target Start/End: Original strand, 385622 - 386284
Alignment:
| Q |
8 |
caaatatagaatggaactatcaacaccaagttccttgaagtacatggcgtcctataattgtcgtttatagtcatataatttcttacattcctgatagata |
107 |
Q |
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| T |
385622 |
caaatatagaatggaactatcaacaccaagttccttgaagtacatggcgtcctataattgtcgtttataatcatataatttcttacattcctgatagata |
385721 |
T |
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| Q |
108 |
taatgatatcagcctggaaggagcaaatatgagagagttctgacaaatggtttagtattgaaatatgtgaaaagtttttgttaactctcttgcaattgac |
207 |
Q |
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| T |
385722 |
taatgatatcagcctggaaggagcaaatatgagagagttctgacaaatggtttagtattgaaatatgtgaaaagtttttgttaactctcttgcaattgac |
385821 |
T |
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| Q |
208 |
tcaaataaaatttagtcatttttttcctttcacgagccnnnnnnnnnnnnnnt---tgctcggtaatcttttgagataatgatgaatttacagcttttcc |
304 |
Q |
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| T |
385822 |
tcaaataaaatttagtcatttttttcctttcacgagccaaaaaaaaaaaaaaaaaattctcggtaatcttttgagataatgatgaatttacagcttttcc |
385921 |
T |
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| Q |
305 |
atattggatgtggggatggtgattatttgagtagtatgtgaattttgtaaagggtcattatttgagtagtctgtgaattttgcatttggatggggctggt |
404 |
Q |
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| T |
385922 |
atattggatgtggggctggtgattatttgagtagcatgtgaattttgtaaagggtcattatttgagtagtctgtgaattttgcatttggaaggggctggt |
386021 |
T |
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| Q |
405 |
gattttacctacaagcttgtctgtttatttttgaaggattacaggcataaacatcccgaagtaaccatccttgatcctccagatgcaattcagcacttgc |
504 |
Q |
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| T |
386022 |
gattttacctacaaacttgtctgtttatgtttgaaggattacaggcataaacatcccgaagtaaccatccttgaccctccagatgcaattcagcacttgc |
386121 |
T |
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| Q |
505 |
tcaatcgacaatccatgctacaaaatgtggcagagctaaacttatctgactgccatggtaacttatttactacatcctaattcaatttactaaataagtg |
604 |
Q |
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| T |
386122 |
tcaatcgacaatccatgctacaaaatgtggcagagctaaacttatctgactgccatggtaacttatttactacatcctaattcaatttactaaataagtg |
386221 |
T |
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| Q |
605 |
aaaaaag-aaaacacttgatctgaaatataaaaacaagtaatttttcaatttgaagtgttttc |
666 |
Q |
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| T |
386222 |
aaaaaagaaaaacacttgatctgaaatataaaaacaagtcatttttcaatttgaagtgttttc |
386284 |
T |
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Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 430 - 565
Target Start/End: Complemental strand, 47848745 - 47848610
Alignment:
| Q |
430 |
tatttttgaaggattacaggcataaacatcccgaagtaaccatccttgatcctccagatgcaattcagcacttgctcaatcgacaatccatgctacaaaa |
529 |
Q |
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|||| |||||||||| |||||| ||||||||||| ||| | | ||||||||||||||||||||||| || || | ||| || ||||||||||| ||| | |
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| T |
47848745 |
tattattgaaggatttcaggcaaaaacatcccgatgtattcgttcttgatcctccagatgcaattcaacatttacacaaccgccaatccatgcttcaaga |
47848646 |
T |
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| Q |
530 |
tgtggcagagctaaacttatctgactgccatggtaa |
565 |
Q |
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| T |
47848645 |
tgtggtggatctaaacttatctgagtgcaatggtaa |
47848610 |
T |
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