View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0757_low_1 (Length: 821)
Name: NF0757_low_1
Description: NF0757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0757_low_1 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 502; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 225 - 821
Target Start/End: Original strand, 47562236 - 47562833
Alignment:
| Q |
225 |
gttgatgacttttcattgaacaattcgtaatccaattgcacaaaaattctctagcaatgtcttgacttagatgaattcactaaaataaattatttttctc |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||| |
|
|
| T |
47562236 |
gttgatgacttttcattgaacaattcgtaatccaattgcacaaaaattctctagcaatgtcttgacttagatgaattcactaaaaaaaaaaaaatttctc |
47562335 |
T |
|
| Q |
325 |
ttgattttatttctaatgcttaaagggcagaagtttgttgtgtttctttttccatatgattttaatttatctatttgaagatacactagattatttaaca |
424 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47562336 |
ttgattttatttctaatgcttaaagggcagaagtttgttgtgtttctttttccgtatgattttaatttatctatttgaagatacactagattatttaaca |
47562435 |
T |
|
| Q |
425 |
aaaatatgagtcaatacttaccaaaatctaagcggtccattga--atcactaaacctttacaaatggttcgccattgttagagttttcaacctgcttttc |
522 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
47562436 |
aaaatatgagtcaatacttaccaaaatctaaacggtccattgaatatcactaaacctttacaaatggttcaccattgttagagttttcaacctgcttttc |
47562535 |
T |
|
| Q |
523 |
tccagattgttttacctctccttgttgttcaagcctgcaatcacaacaaacacataaattatactatactcacattgaaacaaaacnnnnnnntaaatta |
622 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
47562536 |
tccagattgttttacctctccttgttgttcaagcctgcaatcacaacaaacacataaattatactatactcacattgaaacaaaac-aaaaaataaatta |
47562634 |
T |
|
| Q |
623 |
taattaatagcattagttttccctatgattcaccccatctcaacaatgggtttggcatgcatcttctaacgaatggactctcttaaaaatacacatgtgt |
722 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||| |||||||||||||||||||||| || |
|
|
| T |
47562635 |
taattaatagcattagttttccctatgattcaccccatcttagcattgggtttggcatgcatcttctaacgaattgactctcttaaaaatacacatgcgt |
47562734 |
T |
|
| Q |
723 |
atgtcaacatcctaaatctatctggaaatatatgtagaccatcataatctcaaattgcatagtaagaaacaccattccaaaatttatgtaaaaaagtaa |
821 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47562735 |
atgtcaacatcctaaatgtatctggaaatatatgtagaccatcataatcccaaattgcatagtaagaaacaccattccaaaatttatgtaaaaaagtaa |
47562833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 47562012 - 47562171
Alignment:
| Q |
1 |
tttttactttacatgaaaagaaaccacataaacttaaaagtatagaacaaatataatttatcagataggtcatttaccttacacgtaataaacaattgac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47562012 |
tttttactttacatgaaaagaaaccacataaacttaaaagtatagaacatatataatttatcagataggtcatttaccttacacgtaataaacaattgac |
47562111 |
T |
|
| Q |
101 |
tcgggcagacaaattgtctaacctcaacccatctgcccctgcatcaacaaatgcaaatgt |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47562112 |
tcgggcagacaaattgtctaacctcaacccatctgcccctgcatcaacaaatgcaaatgt |
47562171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University