View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0757_low_12 (Length: 288)
Name: NF0757_low_12
Description: NF0757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0757_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 10 - 259
Target Start/End: Original strand, 3304248 - 3304497
Alignment:
| Q |
10 |
gcaaaggcctatgtagatggctgccccatcttccatcaaccattttcagtagaggtatatgtaagtagagaatgggaaaaaatcagttctaaaactgaga |
109 |
Q |
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| T |
3304248 |
gcaaaggcctatgtagatggctgtcccatcttccatcaaccattttcagtagaggtatatgtaagtagagaatgggaaaaaatcagttctaaaactgaga |
3304347 |
T |
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| Q |
110 |
ctgtaaaattgaaatagtggaaattggaaaacaataagttacctctttctaagaccattcaagaaaaactaataattaaagaagcgggagaatctccttt |
209 |
Q |
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| T |
3304348 |
ccgtaaaattgaattagtggaaattggaaaacaataagttacctctttctaagaccattcaagaaaaactaataattaaagaagcgggagaatctacttt |
3304447 |
T |
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| Q |
210 |
ctatctgaatgctgagttaaattttctcatttctataccaatgtaccact |
259 |
Q |
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| T |
3304448 |
ctatctgaatgctgagttaaattttctcatttctataccaatgtaccact |
3304497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 67 - 241
Target Start/End: Original strand, 3292410 - 3292582
Alignment:
| Q |
67 |
tatgtaagtagagaatggga-aaaaatcagttctaaaactgagactgtaaaattgaaatagtggaaattggaaaacaataagttacctctttctaagacc |
165 |
Q |
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| T |
3292410 |
tatgtaactagagaatgggacaaaaatcagttctaaaactaagactgtaagtt------attagaaattggaaaacaataatttacctctgtctaagacc |
3292503 |
T |
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| Q |
166 |
attcaagaaaaactaataattaaa---gaagcgggagaatctcctttctatctgaatgctgagttaaattttctcattt |
241 |
Q |
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| T |
3292504 |
attgaaggaaaagtaataattaaagacgaagtggcagaatcccctttctatctgaatgtagacttaaattttctcattt |
3292582 |
T |
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