View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0757_low_13 (Length: 282)

Name: NF0757_low_13
Description: NF0757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0757_low_13
NF0757_low_13
[»] chr1 (1 HSPs)
chr1 (52-244)||(43663219-43663411)


Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 52 - 244
Target Start/End: Original strand, 43663219 - 43663411
Alignment:
Q  52 acatcatcatcactacattatcttctgagcatccaaaatgtaccaaatatcacataaataaagaaagggctgagtcctgctagaacaggatttctataca 151  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43663219 acatcatcatcactacgttatcttctgagcatccaaaatgtaccaaatatcacataaataaagaaagggctgagtcctgctagaacaggatttctataca 43663318  T
Q  152 gcctctcatcaaactttacaattaaaaatgactggttattacttagtcattcatgcaagccataaaatggcaattctagagcattttgttgga 244  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43663319 gcctctcatcaaactttacaattaaaaatgactggttattacttagtcattcatgcaagccataaaatggcaattctagagcattttgttgga 43663411  T

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