View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0757_low_16 (Length: 274)
Name: NF0757_low_16
Description: NF0757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0757_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 30 - 245
Target Start/End: Complemental strand, 12752967 - 12752751
Alignment:
| Q |
30 |
acaccttggttttcaagttttgcagaatccacaattccatgcttgaatctgagtaggatgaacacgtctcccaagtctgttttagacatcactgatggcc |
129 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12752967 |
acaccttggttttcaagttttgcagaatctacaattccatgcttgaatctgagtaggatgaacacgtctcccaagtctgttttagacatcactgatggcc |
12752868 |
T |
|
| Q |
130 |
aagataaatcattttctatttcaaatgaaaatattgaaaggagtggggccggtaaatcc-nnnnnnnttctgagaagtctgactattcttgtcaacaaag |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
12752867 |
aagataaatcattttctatttcaaatgaaaatattgaaaggagtggggtcggtaaatccaaaaaaaattctgagaagtctgattattcttgtcaacaaag |
12752768 |
T |
|
| Q |
229 |
tcgcaagtttcctgaaa |
245 |
Q |
| |
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||||||||||||||||| |
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| T |
12752767 |
tcgcaagtttcctgaaa |
12752751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 30 - 245
Target Start/End: Complemental strand, 12815927 - 12815711
Alignment:
| Q |
30 |
acaccttggttttcaagttttgcagaatccacaattccatgcttgaatctgagtaggatgaacacgtctcccaagtctgttttagacatcactgatggcc |
129 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12815927 |
acaccttggttttcaagttttgcagaatctacaattccatgcttgaatctgagtaggatgaacacgtctcccaagtctgttttagacatcactgatggcc |
12815828 |
T |
|
| Q |
130 |
aagataaatcattttctatttcaaatgaaaatattgaaaggagtggggccggtaaatcc-nnnnnnnttctgagaagtctgactattcttgtcaacaaag |
228 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
12815827 |
aagataaatcattttctatttcaaatgaaaatattgaaaggagtggggtcggtaaatccaaaaaaaattctgagaagtctgattattcttgtcaacaaag |
12815728 |
T |
|
| Q |
229 |
tcgcaagtttcctgaaa |
245 |
Q |
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||||||||||||||||| |
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| T |
12815727 |
tcgcaagtttcctgaaa |
12815711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 30 - 150
Target Start/End: Original strand, 7773948 - 7774068
Alignment:
| Q |
30 |
acaccttggttttcaagttttgcagaatccacaattccatgcttgaatctgagtaggatgaacacgtctcccaagtctgttttagacatcactgatggcc |
129 |
Q |
| |
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||||| |||||||||| |||||||||||| ||||||||| |||||||||||||| ||||||| ||||| |||||||||||||||||||| ||| |||||| |
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| T |
7773948 |
acaccgtggttttcaaattttgcagaatctacaattccaagcttgaatctgagtcggatgaatacgtcccccaagtctgttttagacataacttatggcc |
7774047 |
T |
|
| Q |
130 |
aagataaatcattttctattt |
150 |
Q |
| |
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| ||||||||| |||| |||| |
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| T |
7774048 |
aggataaatcaatttcaattt |
7774068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 7767813 - 7767896
Alignment:
| Q |
30 |
acaccttggttttcaagttttgcagaatccacaattccatgcttgaatctgagtaggatgaacacgtctcccaagtctgtttta |
113 |
Q |
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||||| |||||||||| |||||||||||| ||||||||| |||||||||||||| ||||||| ||||| ||||||||||||||| |
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| T |
7767813 |
acaccgtggttttcaaattttgcagaatctacaattccaagcttgaatctgagtcggatgaatacgtcccccaagtctgtttta |
7767896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 77 - 172
Target Start/End: Original strand, 7778818 - 7778913
Alignment:
| Q |
77 |
tctgagtaggatgaacacgtctcccaagtctgttttagacatcactgatggccaagataaatcattttctatttcaaatgaaaatattgaaaggag |
172 |
Q |
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||||||| |||||| |||||||||||||||||||||||||||||| || |||| |||||||||||||||||| |||||||||||| ||||||| |
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| T |
7778818 |
tctgagtctgatgaatacgtctcccaagtctgttttagacatcacttattgccatgataaatcattttctattgtgaatgaaaatattaaaaggag |
7778913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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