View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0757_low_18 (Length: 252)
Name: NF0757_low_18
Description: NF0757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0757_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 5 - 190
Target Start/End: Original strand, 24850091 - 24850276
Alignment:
| Q |
5 |
aagaagcaaaggaacatgctaccttgcagatcctctnnnnnnncatgctaccttgatctgatacaacatagtaactgatctaagtaaatttatttgtcaa |
104 |
Q |
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| T |
24850091 |
aagaaccaaaggaacatgctaccttgcagatcctctaaaaaaacatgctaccttgatctgatacaacatagtaactgatctaagtaaatttatttgtcaa |
24850190 |
T |
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| Q |
105 |
aattcaaaaattagtagaaacacagctgattctggagtggtattttattcgattggtaacttgactaatatccaacctccaaactt |
190 |
Q |
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| T |
24850191 |
aattcaaaaattagtagaaacacagctgattctggagtggtattttattcgattggtaacttgactaatgtccaacctccaaactt |
24850276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 24850298 - 24850335
Alignment:
| Q |
215 |
tcagattcttgatctgatatgggaaaggagtttttctc |
252 |
Q |
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| T |
24850298 |
tcagattcttgatctgatatgggaaaggagtttttctc |
24850335 |
T |
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