View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0757_low_4 (Length: 477)
Name: NF0757_low_4
Description: NF0757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0757_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 30 - 380
Target Start/End: Complemental strand, 44267720 - 44267376
Alignment:
| Q |
30 |
gaatactttgtaagtttccagcacaattcccttctataaagattgccttgccggtgaaggtatatatagatagaaagatcttgtggaaaaagtagttctt |
129 |
Q |
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| T |
44267720 |
gaatactttgtaagtttccagcacaattcccttctataaagattgcc-----ggtgaaggtatatatagatagaaagatcttgtggaaaaagtagttctt |
44267626 |
T |
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| Q |
130 |
tacagaatgagttacaataaggtgaaaagactcacattccactttcttttatttactatgtccaccaatgtgtataaatagtgaacatttaagtgaaaaa |
229 |
Q |
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| T |
44267625 |
tacagaatgagttacaataaggtgaaaagactcatattccactttcttt-atttactttgtccaccaatgtgtataaatagtgaacatttaagtgaaaaa |
44267527 |
T |
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| Q |
230 |
tgcatcatgctatgttatagcctttaataatgtgtattgattagtgttttctttacaactactactatatatattagaacatgatgaataactttactta |
329 |
Q |
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| T |
44267526 |
tgcatcatcctatgttatagcctttaataatgtgtattgattagtgtcttctttacaactactactatatatattagaacatgatgaataactttactta |
44267427 |
T |
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| Q |
330 |
ccattcaaacagtttgattaagacaagtttgatcacatttttgtcaaatat |
380 |
Q |
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| T |
44267426 |
ccattcaaagagtttgattaagataagtttgatcacatttttgtcaaatat |
44267376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 394
Target Start/End: Complemental strand, 44267312 - 44267282
Alignment:
| Q |
364 |
acatttttgtcaaatataagtcccatttatg |
394 |
Q |
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| T |
44267312 |
acatttttgtcaaatataagtcccatttatg |
44267282 |
T |
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