View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0757_low_7 (Length: 381)
Name: NF0757_low_7
Description: NF0757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0757_low_7 |
 | |
|
| [»] scaffold0099 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 14 - 360
Target Start/End: Complemental strand, 24893854 - 24893508
Alignment:
| Q |
14 |
aggggggctactaggtcgaatagtatattttctaatgtgagattgaagtcacttattactcccgggagttggcaaaagggtgagcttttgggccgcggtt |
113 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24893854 |
aggggggatactaggtcgaatagtatattttctaatgtgagattgaagtcacttattactcccgggagttggcaaaagggtgagcttttgggccgcggtt |
24893755 |
T |
|
| Q |
114 |
catttggaactgtatatgaaggaatttctgagtaagtgttgccctctttacttgtgtcttttctcgtttctatcatttgaattttcatagcatgttaaat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24893754 |
catttggaactgtatatgaaggaatttctgagtaagtgttgccctctttacttgtgtcttttctcgtttctatcatttgaattttcatagcatgttaaat |
24893655 |
T |
|
| Q |
214 |
taacagaaaattactttcaccttctacttctacttaccactcatcaaaaactctaaaatgagtttcattacaccccacaacattacaccccttttcaaat |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24893654 |
taacagaaaattactttcaccttctacttctacttaccactcatcaaaaactctaaaatgagtttcattacaccccacaacattacaccccttttcaaat |
24893555 |
T |
|
| Q |
314 |
cttgtatgtggaggctttagtgcatcgagcttcgcagtttgatgatg |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24893554 |
cttgtatgtggaggctttagtgcatcgagcttcgcagtttgatgatg |
24893508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 22 - 151
Target Start/End: Complemental strand, 24922764 - 24922635
Alignment:
| Q |
22 |
tactaggtcgaatagtatattttctaatgtgagattgaagtcacttattactcccgggagttggcaaaagggtgagcttttgggccgcggttcatttgga |
121 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||| | | |||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24922764 |
tactaggtcgaatagtatatctcctaatgtgagattgaagcctgtaattactcctgggagttggcaaaagggtgagcttttgggccgtggttcatttgga |
24922665 |
T |
|
| Q |
122 |
actgtatatgaaggaatttctgagtaagtg |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
24922664 |
actgtatatgaaggaatttctgagtaagtg |
24922635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 22 - 151
Target Start/End: Complemental strand, 24998854 - 24998725
Alignment:
| Q |
22 |
tactaggtcgaatagtatattttctaatgtgagattgaagtcacttattactcccgggagttggcaaaagggtgagcttttgggccgcggttcatttgga |
121 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||| | | |||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24998854 |
tactaggtcgaatagtatatctcctaatgtgagattgaagcctgtaattactcctgggagttggcaaaagggtgagcttttgggccgtggttcatttgga |
24998755 |
T |
|
| Q |
122 |
actgtatatgaaggaatttctgagtaagtg |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
24998754 |
actgtatatgaaggaatttctgagtaagtg |
24998725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 29 - 149
Target Start/End: Complemental strand, 24905665 - 24905545
Alignment:
| Q |
29 |
tcgaatagtatattttctaatgtgagattgaagtcacttattactcccgggagttggcaaaagggtgagcttttgggccgcggttcatttggaactgtat |
128 |
Q |
| |
|
|||||| ||| |||||||||| ||||||||| | || |||||||||| ||||||||| |||||||||| |||||||| | ||||| |||||| ||||| |
|
|
| T |
24905665 |
tcgaattgtacattttctaatctgagattgatgccagttattactcctgggagttgggaaaagggtgaacttttgggtagtggttcgtttggatttgtat |
24905566 |
T |
|
| Q |
129 |
atgaaggaatttctgagtaag |
149 |
Q |
| |
|
|||||||||||||| |||||| |
|
|
| T |
24905565 |
atgaaggaatttctcagtaag |
24905545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 190
Target Start/End: Complemental strand, 24904784 - 24904739
Alignment:
| Q |
145 |
gtaagtgttgccctctttacttgtgtcttttctcgtttctatcatt |
190 |
Q |
| |
|
|||||||||||||||||||||||| |||| | ||||||||| |||| |
|
|
| T |
24904784 |
gtaagtgttgccctctttacttgtatcttatttcgtttctaccatt |
24904739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0099 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0099
Description:
Target: scaffold0099; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 22 - 151
Target Start/End: Complemental strand, 35831 - 35695
Alignment:
| Q |
22 |
tactaggtcgaatagtatattttct-aatgtgagatt-gaagtcactta--ttactcccgggagttggcaaaa-gggtgagctttt-gggccgcggttca |
115 |
Q |
| |
|
|||||||||||||||||||| | || ||||||||||| |||||| || ||||||| |||||||||||||| |||||||||||| |||||| |||||| |
|
|
| T |
35831 |
tactaggtcgaatagtatatctccttaatgtgagatttgaagtcctgtaaattactcctgggagttggcaaaaagggtgagctttttgggccgtggttca |
35732 |
T |
|
| Q |
116 |
tttggaactgtatatg-aaggaatttctgagtaagtg |
151 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |
|
|
| T |
35731 |
tttggaactgtatatgtaaggaatttctgagtaagtg |
35695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 152
Target Start/End: Complemental strand, 33023096 - 33023027
Alignment:
| Q |
83 |
tggcaaaagggtgagcttttgggccgcggttcatttggaactgtatatgaaggaatttctgagtaagtgt |
152 |
Q |
| |
|
||||||||||||| ||||||| | |||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
33023096 |
tggcaaaagggtggctttttggggggtggttcatttggatctgtctatgaaggaatttctgagtaagtgt |
33023027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University