View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0757_low_9 (Length: 359)

Name: NF0757_low_9
Description: NF0757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0757_low_9
NF0757_low_9
[»] chr6 (1 HSPs)
chr6 (167-202)||(14470916-14470951)
[»] scaffold0525 (1 HSPs)
scaffold0525 (167-202)||(5539-5574)
[»] chr7 (1 HSPs)
chr7 (167-202)||(2531341-2531376)
[»] chr2 (1 HSPs)
chr2 (167-202)||(31343952-31343987)


Alignment Details
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 202
Target Start/End: Original strand, 14470916 - 14470951
Alignment:
Q  167 acatcatcaagtacacctaacaactcataaatatct 202  Q
    ||||||||||||||||||||||||||||||||||||    
T  14470916 acatcatcaagtacacctaacaactcataaatatct 14470951  T

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Target: scaffold0525 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 202
Target Start/End: Complemental strand, 5574 - 5539
Alignment:
Q  167 acatcatcaagtacacctaacaactcataaatatct 202  Q
    |||||||||||||||||||| |||||||||||||||    
T  5574 acatcatcaagtacacctaagaactcataaatatct 5539  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 202
Target Start/End: Complemental strand, 2531376 - 2531341
Alignment:
Q  167 acatcatcaagtacacctaacaactcataaatatct 202  Q
    ||||||||||||||||||||||||||||| ||||||    
T  2531376 acatcatcaagtacacctaacaactcatagatatct 2531341  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 202
Target Start/End: Original strand, 31343952 - 31343987
Alignment:
Q  167 acatcatcaagtacacctaacaactcataaatatct 202  Q
    ||||||||||||||||||||||||||||| ||||||    
T  31343952 acatcatcaagtacacctaacaactcatagatatct 31343987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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