View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0758_high_1 (Length: 788)
Name: NF0758_high_1
Description: NF0758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0758_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 169; Significance: 3e-90; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 280 - 488
Target Start/End: Original strand, 34070667 - 34070875
Alignment:
| Q |
280 |
atttgaacatcaactacattatattatataaagatcaaattaaatacaaaatatacttaatccagggatcaagactgattatgagttgattttgacccaa |
379 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||| ||||||||| |
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| T |
34070667 |
atttgaacatcaagtacattatattatataaagatcaaattaaatacaaaatttacttaatccagagaccaagactgattatgagttgatcttgacccaa |
34070766 |
T |
|
| Q |
380 |
tacaacatcataaaacctcgcccagaccaacatgacattatctaatagcagggccgtctctatggaactagaggcccgactctcaaagtaaatacatttc |
479 |
Q |
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|
|||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34070767 |
cacaacatcataaaacctcgcccagaccaacataatattatctaagagcagggccgtctctatggaactagagacccgactctcaaagtaaatacatttc |
34070866 |
T |
|
| Q |
480 |
tagaagaag |
488 |
Q |
| |
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||||||||| |
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|
| T |
34070867 |
tagaagaag |
34070875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 549 - 713
Target Start/End: Original strand, 34070935 - 34071101
Alignment:
| Q |
549 |
gagagaataattataatgtttgttattagagatttactattttataccataagtcttgacgctactttattgtctttcgagatttttcatgggatt--ta |
646 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |
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| T |
34070935 |
gagagaataattataatgtttgttattagagatttgctattttataccataagtcttgacgctactttgttgtctttcgagatttttcatgggatttata |
34071034 |
T |
|
| Q |
647 |
tatatgttgaatgctttctttcttttgttttatttgtttatctatgtgatgtgatatttagcttatt |
713 |
Q |
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| T |
34071035 |
tatatgttgcatgctttctttcgtttgttttatttgtttatttatgtgatgtgatatttagcttatt |
34071101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 34070401 - 34070603
Alignment:
| Q |
1 |
ccaaacattttaggaatctcatctataatctatacgaatgggatattacacttggttcacaacacctgcacccacaaggtatccttctttgcacttagat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34070401 |
ccaaacattttaggaatctcatctataatctatacgaatggg-------------ttcacaacacctgcacccacaaggtatccttctttgcacttagat |
34070487 |
T |
|
| Q |
101 |
tccaagttccaaccaatattcattaatctaaaagaaaatcattgtctcccnnnnnnnntcatatgcatgctctannnnnnngatcatcttctcccaaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
34070488 |
tccaagttccaaccaatattcattaatctaaaagaaaatcattgtctcccaaaaaaaatcatatgcatgctctatttttttgatcatcttctcccaaaaa |
34070587 |
T |
|
| Q |
201 |
acacatgtatgtcagc |
216 |
Q |
| |
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| |||||||||||||| |
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|
| T |
34070588 |
aaacatgtatgtcagc |
34070603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 550 - 600
Target Start/End: Original strand, 30058666 - 30058716
Alignment:
| Q |
550 |
agagaataattataatgtttgttattagagatttactattttataccataa |
600 |
Q |
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|
|||||||||||||||||||| ||||||||| ||| ||||||||||| |||| |
|
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| T |
30058666 |
agagaataattataatgtttattattagagctttgctattttatacgataa |
30058716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 550 - 600
Target Start/End: Original strand, 30156931 - 30156981
Alignment:
| Q |
550 |
agagaataattataatgtttgttattagagatttactattttataccataa |
600 |
Q |
| |
|
|||||||||||||||||||| | ||||||| ||||||||||||||| |||| |
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|
| T |
30156931 |
agagaataattataatgtttatgattagaggtttactattttatacgataa |
30156981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 549 - 595
Target Start/End: Original strand, 41026655 - 41026701
Alignment:
| Q |
549 |
gagagaataattataatgtttgttattagagatttactattttatac |
595 |
Q |
| |
|
||||||| ||||||||||||||| ||||||| |||||||| |||||| |
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|
| T |
41026655 |
gagagaacaattataatgtttgtgattagagctttactatgttatac |
41026701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 558 - 600
Target Start/End: Original strand, 38043190 - 38043232
Alignment:
| Q |
558 |
attataatgtttgttattagagatttactattttataccataa |
600 |
Q |
| |
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|||||||||||||||||||||| |||| |||||||||| |||| |
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| T |
38043190 |
attataatgtttgttattagagctttattattttatacaataa |
38043232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 557 - 602
Target Start/End: Original strand, 5557884 - 5557929
Alignment:
| Q |
557 |
aattataatgtttgttattagagatttactattttataccataagt |
602 |
Q |
| |
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||||||||| |||||| |||||| ||||||||||||||| |||||| |
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| T |
5557884 |
aattataatatttgttgttagagctttactattttatacgataagt |
5557929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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