View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0758_high_11 (Length: 272)

Name: NF0758_high_11
Description: NF0758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0758_high_11
NF0758_high_11
[»] chr4 (14 HSPs)
chr4 (1-126)||(5101929-5102054)
chr4 (3-102)||(5106203-5106302)
chr4 (10-75)||(2467679-2467744)
chr4 (17-77)||(2525943-2526003)
chr4 (23-77)||(2519368-2519422)
chr4 (26-76)||(12126962-12127012)
chr4 (28-71)||(2547613-2547656)
chr4 (26-76)||(12124906-12124956)
chr4 (23-75)||(2367600-2367652)
chr4 (28-76)||(2477713-2477761)
chr4 (23-75)||(2625296-2625348)
chr4 (23-76)||(2373164-2373217)
chr4 (16-77)||(5035808-5035869)
chr4 (17-77)||(2536677-2536737)
[»] chr7 (1 HSPs)
chr7 (4-126)||(2576239-2576361)


Alignment Details
Target: chr4 (Bit Score: 126; Significance: 5e-65; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 5101929 - 5102054
Alignment:
Q  1 acaatggcagccgctgcaacaggttcatatttaccggatgagttatgggagcgcatcttcaaattcctcaacgacgaagttaagaacatctacgatatcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5101929 acaatggcagccgctgcaacaggttcatatttaccggatgagttatgggagcgcatcttcaaattcctcaacgacgaagttaagaacatctacgatatcc 5102028  T
Q  101 gtgcagatgggatgctagcttataac 126  Q
    ||||||||||||||||||||||||||    
T  5102029 gtgcagatgggatgctagcttataac 5102054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 3 - 102
Target Start/End: Original strand, 5106203 - 5106302
Alignment:
Q  3 aatggcagccgctgcaacaggttcatatttaccggatgagttatgggagcgcatcttcaaattcctcaacgacgaagttaagaacatctacgatatccgt 102  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||  |||||||||| ||||||||||||    
T  5106203 aatggcagccgatgcaacaggttcatatttaccggatgagttatgggagggcatcttcaaattcctcaccaacgactttaagaacatatacgatatccgt 5106302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 2467744 - 2467679
Alignment:
Q  10 gccgctgcaacaggttcatatttaccggatgagttatgggagcgcatcttcaaattcctcaacgac 75  Q
    ||||| |||||| |||||||||||||  | ||||||||||||||||||||||||||||||||||||    
T  2467744 gccgcggcaacatgttcatatttaccaaaggagttatgggagcgcatcttcaaattcctcaacgac 2467679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 2526003 - 2525943
Alignment:
Q  17 caacaggttcatatttaccggatgagttatgggagcgcatcttcaaattcctcaacgacga 77  Q
    ||||| ||||||||||||| || ||||||||||| | ||||||||||||||||||||||||    
T  2526003 caacacgttcatatttaccagaggagttatgggaacacatcttcaaattcctcaacgacga 2525943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 2519422 - 2519368
Alignment:
Q  23 gttcatatttaccggatgagttatgggagcgcatcttcaaattcctcaacgacga 77  Q
    |||||||||||||||| |||||||||||||||||  |||| ||||||||||||||    
T  2519422 gttcatatttaccggaggagttatgggagcgcattgtcaagttcctcaacgacga 2519368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 12127012 - 12126962
Alignment:
Q  26 catatttaccggatgagttatgggagcgcatcttcaaattcctcaacgacg 76  Q
    |||||||||| |||||||||||||||  |||||||||||||||||||||||    
T  12127012 catatttacctgatgagttatgggagatcatcttcaaattcctcaacgacg 12126962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 2547656 - 2547613
Alignment:
Q  28 tatttaccggatgagttatgggagcgcatcttcaaattcctcaa 71  Q
    |||||||| |||||||||||||||| ||||||||||||||||||    
T  2547656 tatttaccagatgagttatgggagcacatcttcaaattcctcaa 2547613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 12124956 - 12124906
Alignment:
Q  26 catatttaccggatgagttatgggagcgcatcttcaaattcctcaacgacg 76  Q
    |||||||||| |||||| ||||||||  |||||||||||||||||||||||    
T  12124956 catatttaccagatgagatatgggagatcatcttcaaattcctcaacgacg 12124906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 2367600 - 2367652
Alignment:
Q  23 gttcatatttaccggatgagttatgggagcgcatcttcaaattcctcaacgac 75  Q
    ||||||||||| | |||||||||||||||  |||||||||||| |||||||||    
T  2367600 gttcatatttaacagatgagttatgggagatcatcttcaaatttctcaacgac 2367652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 2477761 - 2477713
Alignment:
Q  28 tatttaccggatgagttatgggagcgcatcttcaaattcctcaacgacg 76  Q
    |||||||| || ||||| |||||| ||||||||||||||||||||||||    
T  2477761 tatttaccagaggagttgtgggagggcatcttcaaattcctcaacgacg 2477713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 2625296 - 2625348
Alignment:
Q  23 gttcatatttaccggatgagttatgggagcgcatcttcaaattcctcaacgac 75  Q
    ||||| ||||||| || ||||||||||| | ||||||||||||||||||||||    
T  2625296 gttcagatttaccagaggagttatgggaacacatcttcaaattcctcaacgac 2625348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 2373164 - 2373217
Alignment:
Q  23 gttcatatttaccggatgagttatgggagcgcatcttcaaattcctcaacgacg 76  Q
    ||||||||||| | ||||| |||||||||  |||||||||||| ||||||||||    
T  2373164 gttcatatttaacagatgaattatgggagatcatcttcaaatttctcaacgacg 2373217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 5035869 - 5035808
Alignment:
Q  16 gcaacaggttcatatttaccggatgagttatgggagcgcatcttcaaattcctcaacgacga 77  Q
    |||||| ||||| ||||||| || || ||||||||   ||||||||||||||||||||||||    
T  5035869 gcaacacgttcaaatttaccagaggatttatgggaaaacatcttcaaattcctcaacgacga 5035808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 2536737 - 2536677
Alignment:
Q  17 caacaggttcatatttaccggatgagttatgggagcgcatcttcaaattcctcaacgacga 77  Q
    ||||| ||||||||||||| || |||||||||||   |||||||||||| |||||| ||||    
T  2536737 caacacgttcatatttaccagaggagttatgggaatacatcttcaaatttctcaaccacga 2536677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 126
Target Start/End: Original strand, 2576239 - 2576361
Alignment:
Q  4 atggcagccgctgcaacaggttcatatttaccggatgagttatgggagcgcatcttcaaattcctcaacgacgaagttaagaacatctacgatatccgtg 103  Q
    |||||||  |||||||||| |||||||||||  ||||||||||||| || |||||||| ||||||||||||||  |||||||||||||| ||||| | ||    
T  2576239 atggcagtggctgcaacagtttcatatttactagatgagttatgggggcacatcttcatattcctcaacgacgccgttaagaacatctatgatattcatg 2576338  T
Q  104 cagatgggatgctagcttataac 126  Q
    || |||||||| |||||||||||    
T  2576339 caaatgggatgttagcttataac 2576361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 4911 times since January 2019
Visitors: 4840