View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0758_high_13 (Length: 263)

Name: NF0758_high_13
Description: NF0758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0758_high_13
NF0758_high_13
[»] chr6 (4 HSPs)
chr6 (140-243)||(11626491-11626595)
chr6 (36-124)||(5367637-5367725)
chr6 (36-124)||(3659174-3659261)
chr6 (64-124)||(8286814-8286874)
[»] chr8 (5 HSPs)
chr8 (20-124)||(10536026-10536130)
chr8 (24-122)||(10536737-10536835)
chr8 (38-124)||(32539409-32539495)
chr8 (66-124)||(30905978-30906036)
chr8 (24-69)||(32538325-32538370)
[»] chr4 (21 HSPs)
chr4 (20-124)||(28451482-28451586)
chr4 (30-124)||(9450874-9450968)
chr4 (24-122)||(28450778-28450876)
chr4 (36-124)||(3990897-3990985)
chr4 (37-122)||(4437708-4437793)
chr4 (36-124)||(9268049-9268137)
chr4 (36-124)||(10468702-10468790)
chr4 (36-124)||(52677578-52677666)
chr4 (37-124)||(4438996-4439083)
chr4 (30-124)||(9449741-9449835)
chr4 (38-124)||(12585382-12585468)
chr4 (38-124)||(49028487-49028573)
chr4 (66-123)||(52677804-52677861)
chr4 (80-124)||(45667257-45667301)
chr4 (66-124)||(10286436-10286494)
chr4 (68-122)||(16067578-16067632)
chr4 (66-124)||(36098771-36098829)
chr4 (66-124)||(49028289-49028347)
chr4 (36-124)||(622084-622171)
chr4 (64-124)||(17931314-17931374)
chr4 (80-124)||(25225816-25225860)
[»] chr1 (7 HSPs)
chr1 (20-124)||(14904537-14904641)
chr1 (24-124)||(14903832-14903932)
chr1 (22-124)||(9114845-9114947)
chr1 (22-124)||(9116005-9116107)
chr1 (30-124)||(17690887-17690981)
chr1 (38-124)||(37499396-37499482)
chr1 (30-124)||(17689762-17689855)
[»] chr7 (7 HSPs)
chr7 (20-122)||(18470167-18470269)
chr7 (22-124)||(18471714-18471816)
chr7 (22-124)||(8328221-8328323)
chr7 (36-123)||(8594089-8594176)
chr7 (36-124)||(4265198-4265286)
chr7 (71-124)||(8329038-8329091)
chr7 (80-124)||(8905666-8905710)
[»] chr2 (10 HSPs)
chr2 (22-124)||(4734160-4734262)
chr2 (22-122)||(4733332-4733432)
chr2 (30-124)||(14159232-14159326)
chr2 (38-124)||(4410599-4410685)
chr2 (30-124)||(14160372-14160466)
chr2 (36-124)||(38695110-38695198)
chr2 (64-122)||(18166661-18166719)
chr2 (64-122)||(4409188-4409246)
chr2 (66-124)||(38694914-38694972)
chr2 (66-124)||(42963020-42963078)
[»] chr5 (12 HSPs)
chr5 (22-124)||(9379956-9380058)
chr5 (22-124)||(9380661-9380763)
chr5 (37-124)||(34634094-34634181)
chr5 (22-124)||(1501039-1501141)
chr5 (36-124)||(23322320-23322408)
chr5 (36-124)||(25088430-25088518)
chr5 (36-124)||(25146399-25146487)
chr5 (35-122)||(5841098-5841185)
chr5 (66-124)||(23322124-23322182)
chr5 (66-124)||(43183256-43183314)
chr5 (64-124)||(42792974-42793034)
chr5 (78-122)||(20244515-20244559)
[»] chr3 (17 HSPs)
chr3 (30-124)||(16907956-16908050)
chr3 (36-124)||(27864825-27864913)
chr3 (36-124)||(24107177-24107265)
chr3 (67-124)||(38758860-38758917)
chr3 (68-124)||(31596740-31596797)
chr3 (64-124)||(27865048-27865108)
chr3 (64-124)||(46684124-46684184)
chr3 (66-124)||(3171515-3171573)
chr3 (66-124)||(38758634-38758692)
chr3 (80-124)||(18026117-18026161)
chr3 (64-124)||(19860517-19860577)
chr3 (68-124)||(24107405-24107461)
chr3 (67-122)||(21792245-21792300)
chr3 (70-124)||(21792373-21792427)
chr3 (80-124)||(14812453-14812497)
chr3 (92-124)||(18025906-18025938)
chr3 (36-124)||(19860712-19860799)
[»] scaffold0069 (1 HSPs)
scaffold0069 (36-124)||(19921-20009)
[»] scaffold0008 (2 HSPs)
scaffold0008 (38-124)||(266844-266930)
scaffold0008 (66-124)||(266647-266705)
[»] scaffold0006 (1 HSPs)
scaffold0006 (38-124)||(93657-93743)


Alignment Details
Target: chr6 (Bit Score: 97; Significance: 9e-48; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 140 - 243
Target Start/End: Complemental strand, 11626595 - 11626491
Alignment:
Q  140 aattgtaacaaatagaacaactagttttgtttgacca-acaaatcagcaaagcaacatttttctattcttttatacaaaagaaatttagcatgagctgat 238  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11626595 aattgtaacaaatagaacaactagttttgtttgaccatacaaatcagcaaagcaacatttttctattcttttatacaaaagaaatttagcatgagctgat 11626496  T
Q  239 gatgt 243  Q
    |||||    
T  11626495 gatgt 11626491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 124
Target Start/End: Original strand, 5367637 - 5367725
Alignment:
Q  36 aggatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    |||||||||||| |||||| ||   || ||||||||||||| | ||||||||||| |||| || |||||||||||||||||||||||||    
T  5367637 aggatttatttggctaacaaatactaacttaagggaccaaattgtaacgttaataacttatggaaccaaaatgtaaccaacaaataact 5367725  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 124
Target Start/End: Original strand, 3659174 - 3659261
Alignment:
Q  36 aggatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    |||||||||||| |||||| ||   || ||||||||||||| | ||| ||||||| |||| |||||||||||||||| |||||||||||    
T  3659174 aggatttatttggctaacaaatactaacttaagggaccaaattgtaa-gttaataacttatgggaccaaaatgtaactaacaaataact 3659261  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 8286874 - 8286814
Alignment:
Q  64 ttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    |||||| || ||||| ||||||||||  |||| ||||||||||||||||||||||||||||    
T  8286874 ttaaggaactaaaatgtaacgttaattacttaagggaccaaaatgtaaccaacaaataact 8286814  T

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Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 10536130 - 10536026
Alignment:
Q  20 ataaaatttaacggaaaggatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaa 119  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||| |||||||||||| |||||||||||||||||||||||    
T  10536130 ataaaatttaacggaaaggatttatttgactaacatattacaagttaagggaccaaaacgtaatgttaatatcttatgggaccaaaatgtaaccaacaaa 10536031  T
Q  120 taact 124  Q
    |||||    
T  10536030 taact 10536026  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 24 - 122
Target Start/End: Original strand, 10536737 - 10536835
Alignment:
Q  24 aatttaacggaaaggatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataa 122  Q
    ||||||||||||| ||||||||||||||||||| || |||||| ||||||||||  |||| |||||| |||| |||| |||||||||||||||||||||    
T  10536737 aatttaacggaaatgatttatttgactaacagactataagttaggggaccaaaacgtaacattaataacttatgggatcaaaatgtaaccaacaaataa 10536835  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 32539409 - 32539495
Alignment:
Q  38 gatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    |||||||||| ||||| ||||| |||||||||||| ||||| ||| ||||||| |||| | ||  ||||||||||||||||||||||    
T  32539409 gatttatttggctaacggattataagttaagggacaaaaatgtaatgttaataacttatgagattaaaatgtaaccaacaaataact 32539495  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 30905978 - 30906036
Alignment:
Q  66 aagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    ||||||||||| | ||||||||||| |||| ||||| ||||||||||||||||||||||    
T  30905978 aagggaccaaattgtaacgttaataacttatgggactaaaatgtaaccaacaaataact 30906036  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 32538370 - 32538325
Alignment:
Q  24 aatttaacggaaaggatttatttgactaacagattacaagttaagg 69  Q
    |||||||||||||| |||||||||| ||| |||||| |||||||||    
T  32538370 aatttaacggaaagaatttatttgattaatagattataagttaagg 32538325  T

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Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 28451482 - 28451586
Alignment:
Q  20 ataaaatttaacggaaaggatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||| | |||||||||||||||||||||    
T  28451482 ataaaatttaacggaaaggatttatttgactaacagattacaagttaagggaccaaaacgtaatgttaatatcttatgagaccaaaatgtaaccaacaaa 28451581  T
Q  120 taact 124  Q
    |||||    
T  28451582 taact 28451586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 124
Target Start/End: Original strand, 9450874 - 9450968
Alignment:
Q  30 acggaaaggatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    |||| ||||||||||||| |||||||| ||  ||||||||||||||||  ||||||||||| |||| |||||||||| |||||||||||||||||    
T  9450874 acggcaaggatttatttggctaacagagtatgagttaagggaccaaaacgtaacgttaataacttatgggaccaaaacgtaaccaacaaataact 9450968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 122
Target Start/End: Complemental strand, 28450876 - 28450778
Alignment:
Q  24 aatttaacggaaaggatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataa 122  Q
    ||||||||||||| |||||||||||||||| || || |||||| ||||||||||  |||| |||||| |||| |||| |||||||||||||||||||||    
T  28450876 aatttaacggaaatgatttatttgactaacggactataagttaggggaccaaaacgtaacattaataacttatgggatcaaaatgtaaccaacaaataa 28450778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 124
Target Start/End: Original strand, 3990897 - 3990985
Alignment:
Q  36 aggatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    |||||||||||| |||| ||||   || ||||||||||||| | ||||||||||| |||| |||||||||||||||||||||| |||||    
T  3990897 aggatttatttggctaatagatattaacttaagggaccaaattgtaacgttaataacttatgggaccaaaatgtaaccaacaattaact 3990985  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 122
Target Start/End: Complemental strand, 4437793 - 4437708
Alignment:
Q  37 ggatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataa 122  Q
    ||||||||||| |||||||| |  || |||| |||||||||  ||||||||||| |||| ||||||||| ||||||||||||||||    
T  4437793 ggatttatttggctaacagagtctaacttaaaggaccaaaacgtaacgttaataacttatgggaccaaattgtaaccaacaaataa 4437708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 124
Target Start/End: Complemental strand, 9268137 - 9268049
Alignment:
Q  36 aggatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    |||||||||||| |||||| ||   || ||||||||||||| | |||| |||||| |||| ||||||||||||||||||| ||||||||    
T  9268137 aggatttatttggctaacaaatactaacttaagggaccaaattgtaactttaataacttatgggaccaaaatgtaaccaataaataact 9268049  T

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Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 124
Target Start/End: Original strand, 10468702 - 10468790
Alignment:
Q  36 aggatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    |||||||||||| ||| |||||   || |||| |||||||| | ||||||||||| |||| | ||||||||||||||||||||||||||    
T  10468702 aggatttatttggctagcagatactaacttaacggaccaaattgtaacgttaataacttatgagaccaaaatgtaaccaacaaataact 10468790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 124
Target Start/End: Complemental strand, 52677666 - 52677578
Alignment:
Q  36 aggatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    |||||||||||| |||||| ||   || |||| |||||||| | ||||||||||| |||| ||||||||| ||||||||||||||||||    
T  52677666 aggatttatttggctaacatatactaacttaatggaccaaattgtaacgttaataacttatgggaccaaattgtaaccaacaaataact 52677578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 124
Target Start/End: Original strand, 4438996 - 4439083
Alignment:
Q  37 ggatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    |||||||||| ||||||||| |  || ||||| ||||||||  ||||||||||| |||| | ||||||| ||||||||||||||||||    
T  4438996 ggatttatttaactaacagagtctaacttaagagaccaaaacgtaacgttaataacttatgagaccaaattgtaaccaacaaataact 4439083  T

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Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 124
Target Start/End: Complemental strand, 9449835 - 9449741
Alignment:
Q  30 acggaaaggatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    |||| ||||||||| ||| |||||||| ||  ||| |||||| |||||  ||||||||||| |||| | |||||||| |||||||||||||||||    
T  9449835 acggtaaggatttacttggctaacagagtatgagtcaagggatcaaaacgtaacgttaataacttatgagaccaaaacgtaaccaacaaataact 9449741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 12585382 - 12585468
Alignment:
Q  38 gatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    |||||||||| |||||| ||   || ||||||||||||| | ||| ||||||| |||| | || |||||||||||||||||||||||    
T  12585382 gatttatttggctaacatatactaacttaagggaccaaattgtaatgttaataacttatgagatcaaaatgtaaccaacaaataact 12585468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 49028487 - 49028573
Alignment:
Q  38 gatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    |||||||||| |||||| ||   || ||||||||||||| | |||| ||||||  ||| ||||||||||||||||||| ||||||||    
T  49028487 gatttatttggctaacaaatactaacttaagggaccaaattgtaacattaataatttatgggaccaaaatgtaaccaataaataact 49028573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 52677804 - 52677861
Alignment:
Q  66 aagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataac 123  Q
    ||||||||||| |||||| |||||| |||| | ||| |||||||||||||||||||||    
T  52677804 aagggaccaaattataacattaataacttatgagactaaaatgtaaccaacaaataac 52677861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 45667301 - 45667257
Alignment:
Q  80 taacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    ||||||||||| |||| | ||||||||||||||||||||||||||    
T  45667301 taacgttaataacttatgagaccaaaatgtaaccaacaaataact 45667257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 10286494 - 10286436
Alignment:
Q  66 aagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    |||||| |||| | ||||||||||| || | ||||| ||||||||||||||||||||||    
T  10286494 aagggatcaaattgtaacgttaataactaatgggactaaaatgtaaccaacaaataact 10286436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 122
Target Start/End: Original strand, 16067578 - 16067632
Alignment:
Q  68 gggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataa 122  Q
    ||||||||| | ||||||||||| |||| | ||| ||||||||||||||||||||    
T  16067578 gggaccaaattgtaacgttaataacttatgagactaaaatgtaaccaacaaataa 16067632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 36098829 - 36098771
Alignment:
Q  66 aagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    ||||||||||| |||||||||||||  ||| || || ||||| ||||||||||||||||    
T  36098829 aagggaccaaattataacgttaataatttatggaactaaaatataaccaacaaataact 36098771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 49028347 - 49028289
Alignment:
Q  66 aagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    |||||||||||   |||||||||||  ||| ||||| ||||||||||||||||||||||    
T  49028347 aagggaccaaatggtaacgttaataatttatgggactaaaatgtaaccaacaaataact 49028289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 124
Target Start/End: Complemental strand, 622171 - 622084
Alignment:
Q  36 aggatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    |||||||||||| |||||| ||   || ||||||||||||| ||||||||||||| | ||  ||| |||||| ||| ||||||||||||    
T  622171 aggatttatttggctaacaaatactaatttaagggaccaaattataacgttaataacgta-tggatcaaaatataatcaacaaataact 622084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 17931374 - 17931314
Alignment:
Q  64 ttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    |||||||||||   | ||||||||||| |||| ||||||||| ||||||||| ||||||||    
T  17931374 ttaagggaccattttgtaacgttaataacttatgggaccaaattgtaaccaataaataact 17931314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 25225860 - 25225816
Alignment:
Q  80 taacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    ||||||||||| |||| | ||||||||| ||||||||||||||||    
T  25225860 taacgttaataacttatgagaccaaaatataaccaacaaataact 25225816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 14904537 - 14904641
Alignment:
Q  20 ataaaatttaacggaaaggatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaa 119  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||| |||||||||||||||||||||||    
T  14904537 ataaaatttaacagaaatgatttatttgactaacagattacaagttaagggaccaaaacgtaatgttaatatcttatgggaccaaaatgtaaccaacaaa 14904636  T
Q  120 taact 124  Q
    |||||    
T  14904637 taact 14904641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 14903932 - 14903832
Alignment:
Q  24 aatttaacggaaaggatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataac 123  Q
    ||||||||||||| |||||||||||||||| || || |||||| ||||||||||  ||||||||||| |||| |||| ||||||||||||||||||||||    
T  14903932 aatttaacggaaatgatttatttgactaacggactataagttaggggaccaaaacgtaacgttaataacttatgggatcaaaatgtaaccaacaaataac 14903833  T
Q  124 t 124  Q
    |    
T  14903832 t 14903832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 22 - 124
Target Start/End: Complemental strand, 9114947 - 9114845
Alignment:
Q  22 aaaatttaacggaaaggatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaata 121  Q
    |||||||||  ||||||||||||||| |||||  |||| || ||||||||||||||  ||||||||||| |||| |||||||||||||||||||||||||    
T  9114947 aaaatttaatagaaaggatttatttggctaacgaattataaattaagggaccaaaacgtaacgttaataacttatgggaccaaaatgtaaccaacaaata 9114848  T
Q  122 act 124  Q
    |||    
T  9114847 act 9114845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 124
Target Start/End: Original strand, 9116005 - 9116107
Alignment:
Q  22 aaaatttaacggaaaggatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaata 121  Q
    ||||||||||||||| |||||||||  ||||| ||||| |||||||| ||||||||   |||||||||| |||| | |||||||||||||||||||||||    
T  9116005 aaaatttaacggaaatgatttatttagctaacggattataagttaagagaccaaaacgaaacgttaataacttatgagaccaaaatgtaaccaacaaata 9116104  T
Q  122 act 124  Q
    |||    
T  9116105 act 9116107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 30 - 124
Target Start/End: Original strand, 17690887 - 17690981
Alignment:
Q  30 acggaaaggatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    |||| ||||||||||||| |||| ||| || |||||||||||||||||  ||||||||||| |||| ||||||| ||  ||||||||||||||||    
T  17690887 acggcaaggatttatttggctaatagaatataagttaagggaccaaaacgtaacgttaataacttatgggaccagaacataaccaacaaataact 17690981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 37499396 - 37499482
Alignment:
Q  38 gatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    |||||||||| |||||||||   || ||||| ||| ||| |||||| |||||| |||| | ||||||||||||||||||||||||||    
T  37499396 gatttatttggctaacagatactaacttaagagacgaaattataacattaataacttatgagaccaaaatgtaaccaacaaataact 37499482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 124
Target Start/End: Complemental strand, 17689855 - 17689762
Alignment:
Q  30 acggaaaggatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    |||| ||||||||||||  ||||| || || |||||||||||| ||||| ||||||| ||| |||| | |||| ||| |||| ||||||||||||    
T  17689855 acggcaaggatttatttagctaacggaatataagttaagggactaaaatgtaacgtttataacttatgagacc-aaacgtaatcaacaaataact 17689762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 18470269 - 18470167
Alignment:
Q  20 ataaaatttaacggaaaggatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaa 119  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||| |||||| |||| | | |||||||||||||||||||    
T  18470269 ataaaatttaacggaaaggatttatttgactaacagattataagttaagggaccaaaacctaacattaataacttatgtggccaaaatgtaaccaacaaa 18470170  T
Q  120 taa 122  Q
    |||    
T  18470169 taa 18470167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 124
Target Start/End: Original strand, 18471714 - 18471816
Alignment:
Q  22 aaaatttaacggaaaggatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaata 121  Q
    ||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||| ||||||| |||| | ||||||||||||||||||| |||    
T  18471714 aaaatttaacggaaatgatttatttggctaacagattataagttaagggaccaaaatataatgttaataacttatgagaccaaaatgtaaccaacagata 18471813  T
Q  122 act 124  Q
    |||    
T  18471814 act 18471816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 124
Target Start/End: Complemental strand, 8328323 - 8328221
Alignment:
Q  22 aaaatttaacggaaaggatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaata 121  Q
    |||||||||||||||||||||||||| |||||| |||| |||||||||||| ||||  ||||||||||| |||  | ||||||||| |||| || |||||    
T  8328323 aaaatttaacggaaaggatttatttggctaacatattataagttaagggactaaaacgtaacgttaataacttgtgagaccaaaatctaactaataaata 8328224  T
Q  122 act 124  Q
    |||    
T  8328223 act 8328221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 8594176 - 8594089
Alignment:
Q  36 aggatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataac 123  Q
    |||||||| ||| |||||| ||||||||||||||||||||||  ||| ||||| | |||| ||||||||||| ||| |||||||||||    
T  8594176 aggatttaattggctaacaaattacaagttaagggaccaaaacgtaatgttaagaacttatgggaccaaaatataatcaacaaataac 8594089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 124
Target Start/End: Original strand, 4265198 - 4265286
Alignment:
Q  36 aggatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    |||||||||||| | |||||||   || |||| |||||||| | ||||||||||| |||| |||| |||||||||||| |||| |||||    
T  4265198 aggatttatttggcaaacagatactaacttaatggaccaaattgtaacgttaataacttatgggatcaaaatgtaaccgacaactaact 4265286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 8329038 - 8329091
Alignment:
Q  71 accaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    |||||||  ||||||||||| |||  | ||||||||||||||||||||||||||    
T  8329038 accaaaacgtaacgttaataacttttgagaccaaaatgtaaccaacaaataact 8329091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 8905710 - 8905666
Alignment:
Q  80 taacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    |||| |||||| |||| | ||||||||||||||||||||||||||    
T  8905710 taacattaataacttatgagaccaaaatgtaaccaacaaataact 8905666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 124
Target Start/End: Original strand, 4734160 - 4734262
Alignment:
Q  22 aaaatttaacggaaaggatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaata 121  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||  ||||||||||| ||||  ||| ||||||||||||||||||||    
T  4734160 aaaatttaacggaaaggatttatttggctaacagattataagttaagggaccaaaacgtaacgttaataacttataggatcaaaatgtaaccaacaaata 4734259  T
Q  122 act 124  Q
    |||    
T  4734260 act 4734262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 4733432 - 4733332
Alignment:
Q  22 aaaatttaacggaaaggatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaata 121  Q
    ||||||||||  |||||||||||||| ||||| ||||| || ||||||||||||||  ||| ||||||| |||| |||||||||||||||||||||||||    
T  4733432 aaaatttaacataaaggatttatttggctaacggattataaattaagggaccaaaacgtaatgttaataacttatgggaccaaaatgtaaccaacaaata 4733333  T
Q  122 a 122  Q
    |    
T  4733332 a 4733332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 124
Target Start/End: Complemental strand, 14159326 - 14159232
Alignment:
Q  30 acggaaaggatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    |||| ||||||||||||| |||||||| ||  ||||||||||||||||  ||||||||||| |||| |||||||||| |||||||||||||||||    
T  14159326 acggcaaggatttatttggctaacagagtatgagttaagggaccaaaacgtaacgttaataacttatgggaccaaaacgtaaccaacaaataact 14159232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 4410599 - 4410685
Alignment:
Q  38 gatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    |||||||||| |||||||| |  || ||||||||||||||| || |||||||| |||||||||||||| ||||||||||||||||||    
T  4410599 gatttatttggctaacagagtctaacttaagggaccaaaatgtagcgttaataacttacgggaccaaattgtaaccaacaaataact 4410685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 30 - 124
Target Start/End: Original strand, 14160372 - 14160466
Alignment:
Q  30 acggaaaggatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    |||| ||||||||| ||| |||||||| ||  ||| ||||||||||||  ||||||||||| |||| |||||||||| |||||||||||||||||    
T  14160372 acggtaaggatttacttggctaacagagtatgagtcaagggaccaaaacgtaacgttaataacttatgggaccaaaacgtaaccaacaaataact 14160466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 124
Target Start/End: Original strand, 38695110 - 38695198
Alignment:
Q  36 aggatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    |||||||||||| |||||| ||   || ||||||||||||| | |||||||||||  ||| ||||||||||||||||||| ||||||||    
T  38695110 aggatttatttggctaacaaatactaacttaagggaccaaattgtaacgttaataatttatgggaccaaaatgtaaccaataaataact 38695198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 122
Target Start/End: Complemental strand, 18166719 - 18166661
Alignment:
Q  64 ttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataa 122  Q
    ||||||||||||| | ||||||||||| |||| | || |||||||||||||||||||||    
T  18166719 ttaagggaccaaattgtaacgttaataacttatgagatcaaaatgtaaccaacaaataa 18166661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 122
Target Start/End: Complemental strand, 4409246 - 4409188
Alignment:
Q  64 ttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataa 122  Q
    ||||||||||||||  ||||||||||| |||| | ||||||| |||||| |||||||||    
T  4409246 ttaagggaccaaaacgtaacgttaataacttatgagaccaaattgtaactaacaaataa 4409188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 38694972 - 38694914
Alignment:
Q  66 aagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    |||||||||||   |||||||||||  ||| ||||| ||||||||||||||||||||||    
T  38694972 aagggaccaaatggtaacgttaataatttatgggactaaaatgtaaccaacaaataact 38694914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 42963020 - 42963078
Alignment:
Q  66 aagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    |||| |||||| | ||||||||||| |||| | ||| ||||||||||||||||||||||    
T  42963020 aaggcaccaaattgtaacgttaataacttatgagactaaaatgtaaccaacaaataact 42963078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 22 - 124
Target Start/End: Complemental strand, 9380058 - 9379956
Alignment:
Q  22 aaaatttaacggaaaggatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaata 121  Q
    |||||||||||||||||||||||||| |||||| |||| |||||||||||||||||  ||||||||||| |||  || ||||||||||||||||||||||    
T  9380058 aaaatttaacggaaaggatttatttggctaacatattataagttaagggaccaaaacgtaacgttaataacttgtggaaccaaaatgtaaccaacaaata 9379959  T
Q  122 act 124  Q
    |||    
T  9379958 act 9379956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 124
Target Start/End: Original strand, 9380661 - 9380763
Alignment:
Q  22 aaaatttaacggaaaggatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaata 121  Q
    |||||||||||| |||||||||||||||||||| |||| |||| ||||||||||||  |||| |||||| |||| |||| ||||||||||||||||||||    
T  9380661 aaaatttaacgggaaggatttatttgactaacatattataagtgaagggaccaaaacgtaacattaataacttatgggatcaaaatgtaaccaacaaata 9380760  T
Q  122 act 124  Q
    |||    
T  9380761 act 9380763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 37 - 124
Target Start/End: Complemental strand, 34634181 - 34634094
Alignment:
Q  37 ggatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    |||||||||||||||||||| |  || |||| |||||||||| ||||||||||| |||| ||||||||| ||||||||||||||||||    
T  34634181 ggatttatttgactaacagagtctaacttaatggaccaaaatgtaacgttaataacttatgggaccaaattgtaaccaacaaataact 34634094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 124
Target Start/End: Original strand, 1501039 - 1501141
Alignment:
Q  22 aaaatttaacggaaaggatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaata 121  Q
    |||| ||||| | ||||||||||||||||||| || || || ||||||||||||||| |||||||||||  ||| |||||||||||| |||||| |||||    
T  1501039 aaaagttaacagcaaggatttatttgactaacggaatataacttaagggaccaaaatgtaacgttaataatttatgggaccaaaatgaaaccaataaata 1501138  T
Q  122 act 124  Q
    |||    
T  1501139 act 1501141  T

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Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 124
Target Start/End: Original strand, 23322320 - 23322408
Alignment:
Q  36 aggatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    |||||||||||| |||||| ||   || ||||||||||||| | ||||||||||| |||| || |||||||||||||||||||||||||    
T  23322320 aggatttatttggctaacatatactaacttaagggaccaaattgtaacgttaataacttatggaaccaaaatgtaaccaacaaataact 23322408  T

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Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 124
Target Start/End: Complemental strand, 25088518 - 25088430
Alignment:
Q  36 aggatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    |||||||||||| |||||||||   ||  |||||||||||| | |||||||||||  ||| | ||||||||||||||||||||||||||    
T  25088518 aggatttatttggctaacagatactaacataagggaccaaattgtaacgttaataatttatgcgaccaaaatgtaaccaacaaataact 25088430  T

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Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 124
Target Start/End: Complemental strand, 25146487 - 25146399
Alignment:
Q  36 aggatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    |||||||||||| |||||||||   ||  |||||||||||| | |||||||||||  ||| | ||||||||||||||||||||||||||    
T  25146487 aggatttatttggctaacagatactaacataagggaccaaattgtaacgttaataatttatgcgaccaaaatgtaaccaacaaataact 25146399  T

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Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 122
Target Start/End: Original strand, 5841098 - 5841185
Alignment:
Q  35 aaggatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataa 122  Q
    ||||||||||||| |||||| ||   || |||| | |||||| | |||||||||||  ||| ||||||||||||||||||||||||||    
T  5841098 aaggatttatttggctaacaaatactaacttaaagaaccaaattgtaacgttaataatttatgggaccaaaatgtaaccaacaaataa 5841185  T

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Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 23322182 - 23322124
Alignment:
Q  66 aagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    ||||||||||| | |||| |||||| |||| ||||| ||||||||||||||||||||||    
T  23322182 aagggaccaaattgtaacattaataacttatgggactaaaatgtaaccaacaaataact 23322124  T

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Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 43183314 - 43183256
Alignment:
Q  66 aagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    ||||||||||| | ||| |||||||  ||| ||||||||||||||||||||||||||||    
T  43183314 aagggaccaaattgtaatgttaataatttatgggaccaaaatgtaaccaacaaataact 43183256  T

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Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 42793034 - 42792974
Alignment:
Q  64 ttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    ||||||||||||| | |||| ||||||  ||| |||||||||||| |||||||||||||||    
T  42793034 ttaagggaccaaattgtaacattaataatttatgggaccaaaatgaaaccaacaaataact 42792974  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 20244515 - 20244559
Alignment:
Q  78 tataacgttaatatcttacgggaccaaaatgtaaccaacaaataa 122  Q
    ||||| |||||||  ||| ||||||||||||||||||||||||||    
T  20244515 tataatgttaataatttatgggaccaaaatgtaaccaacaaataa 20244559  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 124
Target Start/End: Complemental strand, 16908050 - 16907956
Alignment:
Q  30 acggaaaggatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    |||||||  ||||||||| |||||||| ||  |||||||||||||||| |||||||||||| |||| |||||||||| |||||||||||||||||    
T  16908050 acggaaataatttatttggctaacagagtatgagttaagggaccaaaacataacgttaataacttatgggaccaaaacgtaaccaacaaataact 16907956  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 36 - 124
Target Start/End: Complemental strand, 27864913 - 27864825
Alignment:
Q  36 aggatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    |||||||||||| |||||| ||   || ||||||||||||| | ||||||||||| |||| ||||||||||||||||||||||||||||    
T  27864913 aggatttatttggctaacaaatactaacttaagggaccaaattgtaacgttaataacttatgggaccaaaatgtaaccaacaaataact 27864825  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 124
Target Start/End: Complemental strand, 24107265 - 24107177
Alignment:
Q  36 aggatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    |||||||||||| ||||||||    || ||||| ||||||| | ||||||||||| |||| ||||||||||||||||||||||||||||    
T  24107265 aggatttatttggctaacagaaactaacttaagtgaccaaattgtaacgttaataacttatgggaccaaaatgtaaccaacaaataact 24107177  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 38758860 - 38758917
Alignment:
Q  67 agggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    |||||||||| ||||||||| ||| |||| ||||||||||||||||||||||||||||    
T  38758860 agggaccaaattataacgttgataacttatgggaccaaaatgtaaccaacaaataact 38758917  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 31596740 - 31596797
Alignment:
Q  68 gggaccaaaata-taacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    |||||||||||  ||||||||||| |||| ||||||||||||||||||||||||||||    
T  31596740 gggaccaaaatggtaacgttaataacttatgggaccaaaatgtaaccaacaaataact 31596797  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 27865048 - 27865108
Alignment:
Q  64 ttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    |||| |||||||| | ||||||||||| |||| ||||| ||||||||||||||||||||||    
T  27865048 ttaaaggaccaaattgtaacgttaataacttatgggactaaaatgtaaccaacaaataact 27865108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 46684184 - 46684124
Alignment:
Q  64 ttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    ||||||||||||||  ||| ||||||| |||| |||| |||||||||||||||||||||||    
T  46684184 ttaagggaccaaaacgtaatgttaataacttatgggatcaaaatgtaaccaacaaataact 46684124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 3171573 - 3171515
Alignment:
Q  66 aagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    ||||||||||| | |||| |||||| |||| ||||| ||||||||||||||||||||||    
T  3171573 aagggaccaaattgtaacattaataacttatgggactaaaatgtaaccaacaaataact 3171515  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 38758692 - 38758634
Alignment:
Q  66 aagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    ||||||| ||| | ||||||||||| |||| ||||| ||||||||||||||||||||||    
T  38758692 aagggactaaattgtaacgttaataacttatgggactaaaatgtaaccaacaaataact 38758634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 18026117 - 18026161
Alignment:
Q  80 taacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    ||||||||||| |||| ||||| ||||||||||||||||||||||    
T  18026117 taacgttaataacttatgggactaaaatgtaaccaacaaataact 18026161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 19860577 - 19860517
Alignment:
Q  64 ttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    |||| |||||||| | ||||||||||| |||| ||||| ||||||||||||| ||||||||    
T  19860577 ttaaaggaccaaattgtaacgttaataacttatgggactaaaatgtaaccaataaataact 19860517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 24107405 - 24107461
Alignment:
Q  68 gggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    ||||||||| | ||||||||||| |||| ||||| |||||||||||||||| |||||    
T  24107405 gggaccaaattgtaacgttaataacttatgggactaaaatgtaaccaacaattaact 24107461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 21792300 - 21792245
Alignment:
Q  67 agggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataa 122  Q
    |||||||||| | ||||||||||| |||| ||||| |||||||||||||| |||||    
T  21792300 agggaccaaattgtaacgttaataacttatgggactaaaatgtaaccaaccaataa 21792245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 21792373 - 21792427
Alignment:
Q  70 gaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    ||||||| | ||||||||||| ||||  |||||||||||||| ||||||||||||    
T  21792373 gaccaaattgtaacgttaataacttagaggaccaaaatgtaaacaacaaataact 21792427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 14812497 - 14812453
Alignment:
Q  80 taacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    ||||||||||| |||| |||||||||||||||| || ||||||||    
T  14812497 taacgttaataacttatgggaccaaaatgtaactaaaaaataact 14812453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 124
Target Start/End: Complemental strand, 18025938 - 18025906
Alignment:
Q  92 cttacgggaccaaaatgtaaccaacaaataact 124  Q
    |||| ||||||||||||||||||||||||||||    
T  18025938 cttatgggaccaaaatgtaaccaacaaataact 18025906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 124
Target Start/End: Original strand, 19860712 - 19860799
Alignment:
Q  36 aggatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    |||||||||||| |||| |||||  || |||| |||||||| | ||| ||||||| |||  | ||||||||||||||||| ||||||||    
T  19860712 aggatttatttggctaatagattttaacttaaaggaccaaattgtaatgttaataacttt-gagaccaaaatgtaaccaataaataact 19860799  T

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Target: scaffold0069 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 36 - 124
Target Start/End: Complemental strand, 20009 - 19921
Alignment:
Q  36 aggatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    |||||||||||| |||||||||   || ||||||||||||| | ||||||||||| |||| | ||||||||||||||||||||||||||    
T  20009 aggatttatttggctaacagatactaacttaagggaccaaattgtaacgttaataacttatgcgaccaaaatgtaaccaacaaataact 19921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 266844 - 266930
Alignment:
Q  38 gatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    |||||||||| |||||||||   || ||||||||||||| ||||| ||||||| |||| | ||||||||||||||||||||||||||    
T  266844 gatttatttggctaacagatactaacttaagggaccaaattataaggttaataacttatgtgaccaaaatgtaaccaacaaataact 266930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 266705 - 266647
Alignment:
Q  66 aagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    ||||||||||| |||||| |||||| ||||  |||| ||||||||||||||||||||||    
T  266705 aagggaccaaattataacattaataacttatcggactaaaatgtaaccaacaaataact 266647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 93743 - 93657
Alignment:
Q  38 gatttatttgactaacagattacaagttaagggaccaaaatataacgttaatatcttacgggaccaaaatgtaaccaacaaataact 124  Q
    |||||||||| |||||| ||   || ||||||||| ||| | |||||||||||  ||| |||||||||||||||| |||||||||||    
T  93743 gatttatttggctaacaaatagtaacttaagggactaaattgtaacgttaataatttatgggaccaaaatgtaactaacaaataact 93657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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