View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0758_high_15 (Length: 258)
Name: NF0758_high_15
Description: NF0758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0758_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 28451204 - 28451035
Alignment:
| Q |
19 |
atgaagaattgggggtaaaatagacgaggttgttaccgtaactgggaaaggtaacccacatgaagtatgaatgtgaatccatgaagttgatttgaagttt |
118 |
Q |
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| T |
28451204 |
atgaagaattgggg-taaaagagatgaggttgttaccgtaactgggaaaggtaacccacatgaagtatgaatgtgaatccatgaagttgatttgaagttt |
28451106 |
T |
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| Q |
119 |
gataaatatggttttgaatttggggaaaattgaacattcaagttttaattgaattatagagtttgttgggg |
189 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28451105 |
gataaatatggttttgaatttgggaaaaattgaacattcaagttttaattgaattatagagtttgttgggg |
28451035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 14904260 - 14904091
Alignment:
| Q |
19 |
atgaagaattgggggtaaaatagacgaggttgttaccgtaactgggaaaggtaacccacatgaagtatgaatgtgaatccatgaagttgatttgaagttt |
118 |
Q |
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| T |
14904260 |
atgaagaattgggg-taaaagagatgaggttgttaccgtaactgggaaaggtaatccacatgaagtatgaatgtgaatccatgaagttgatttgaagttt |
14904162 |
T |
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| Q |
119 |
gataaatatggttttgaatttggggaaaattgaacattcaagttttaattgaattatagagtttgttgggg |
189 |
Q |
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| T |
14904161 |
gataaatatggttttgaatttggggaaaattgaacattcaagttttaattgaattatagagtttgttgggg |
14904091 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 10536409 - 10536578
Alignment:
| Q |
19 |
atgaagaattgggggtaaaatagacgaggttgttaccgtaactgggaaaggtaacccacatgaagtatgaatgtgaatccatgaagttgatttgaagttt |
118 |
Q |
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|||||||||||||| ||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10536409 |
atgaagaattgggg-taaaagagatgaggttgttaccgtaactgggaaaggtaatccacatgaagtatgaatgtgaatccatgaagttgatttgaagttt |
10536507 |
T |
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| Q |
119 |
gataaatatggttttgaatttggggaaaattgaacattcaagttttaattgaattatagagtttgttgggg |
189 |
Q |
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|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10536508 |
gataaacatggttttgaatttgggaaaaattgaacattcaagttttaattgaattatagagtttgttgggg |
10536578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 101 - 188
Target Start/End: Complemental strand, 32538606 - 32538519
Alignment:
| Q |
101 |
gaagttgatttgaagtttgataaatatggttttgaatttggggaaaattgaacattcaagttttaattgaattatagagtttgttggg |
188 |
Q |
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|||||||||| |||| ||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||| | ||||| |||| |
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| T |
32538606 |
gaagttgattagaagcttgatgaatatggttttgtatttggggaaaattgaacattgaagttttaattgaattattgggtttgctggg |
32538519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 57 - 188
Target Start/End: Original strand, 18471452 - 18471568
Alignment:
| Q |
57 |
taactgggaaaggtaacccacatgaagtatgaatgtgaatccatgaagttgatttgaagtttgataaatatggttttgaatttggggaaaattgaacatt |
156 |
Q |
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||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
18471452 |
taactgggaaaggta---cacaggaagtatgaatgtgaattcatgaagttgatttgaagttt------------tttgaatttggggaaaattgaacatt |
18471536 |
T |
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| Q |
157 |
caagttttaattgaattatagagtttgttggg |
188 |
Q |
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|||||||||||||||||| | |||||||||| |
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| T |
18471537 |
gaagttttaattgaattattgggtttgttggg |
18471568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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