View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0758_high_20 (Length: 247)

Name: NF0758_high_20
Description: NF0758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0758_high_20
NF0758_high_20
[»] chr6 (3 HSPs)
chr6 (183-224)||(9463459-9463500)
chr6 (147-247)||(12428844-12428945)
chr6 (191-231)||(10346723-10346763)
[»] chr4 (14 HSPs)
chr4 (147-231)||(13761756-13761841)
chr4 (209-245)||(9959363-9959399)
chr4 (191-247)||(16742407-16742463)
chr4 (183-231)||(36543775-36543823)
chr4 (203-247)||(38493059-38493103)
chr4 (183-242)||(41822105-41822164)
chr4 (183-231)||(9469771-9469819)
chr4 (191-231)||(12789650-12789690)
chr4 (191-231)||(19852980-19853020)
chr4 (191-231)||(21441583-21441623)
chr4 (191-231)||(26632938-26632978)
chr4 (191-231)||(50606010-50606050)
chr4 (191-231)||(53369690-53369730)
chr4 (191-231)||(53369874-53369914)
[»] chr3 (6 HSPs)
chr3 (183-231)||(39135348-39135396)
chr3 (182-231)||(46293311-46293360)
chr3 (183-231)||(25253696-25253744)
chr3 (183-231)||(28687066-28687114)
chr3 (191-231)||(32689171-32689211)
chr3 (191-231)||(41609890-41609930)
[»] chr2 (6 HSPs)
chr2 (157-227)||(14103234-14103305)
chr2 (191-231)||(26436356-26436396)
chr2 (191-231)||(27634673-27634713)
chr2 (191-231)||(33831497-33831537)
chr2 (191-231)||(34064707-34064747)
chr2 (209-241)||(40680241-40680273)
[»] chr5 (4 HSPs)
chr5 (183-231)||(38522959-38523007)
chr5 (182-231)||(3801462-3801511)
chr5 (191-231)||(27906100-27906140)
chr5 (183-231)||(32157035-32157083)
[»] chr1 (5 HSPs)
chr1 (189-231)||(7702835-7702877)
chr1 (191-231)||(24469915-24469955)
chr1 (191-231)||(32179860-32179900)
chr1 (191-231)||(37441284-37441324)
chr1 (191-231)||(47602960-47603000)
[»] chr8 (2 HSPs)
chr8 (186-231)||(24854596-24854641)
chr8 (191-231)||(11161574-11161614)
[»] scaffold0316 (1 HSPs)
scaffold0316 (191-231)||(19298-19338)
[»] chr7 (11 HSPs)
chr7 (191-231)||(3930814-3930854)
chr7 (191-231)||(5776228-5776268)
chr7 (191-231)||(5795034-5795074)
chr7 (183-231)||(7447875-7447923)
chr7 (191-231)||(15434250-15434290)
chr7 (191-231)||(23227097-23227137)
chr7 (191-231)||(23236250-23236290)
chr7 (191-231)||(26216279-26216319)
chr7 (191-231)||(37334285-37334325)
chr7 (191-231)||(42072090-42072130)
chr7 (191-231)||(48505886-48505926)


Alignment Details
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 9463500 - 9463459
Alignment:
Q  183 tatagtttaagttcggctcgtttaaataacgaacttaatttt 224  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  9463500 tatagtttaagttcggctcgtttaaataacgaacttaatttt 9463459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 247
Target Start/End: Original strand, 12428844 - 12428945
Alignment:
Q  147 atcgagtcaactcatgaatcaaatgagctgaagtat-tatagtttaagttcggctcgtttaaataacgaacttaattttcagctcatttgattcatgaac 245  Q
    |||||||||||||||||| |||  ||| |||  ||  ||||| | ||||||||||| ||||  ||||||||||||||||||||||| ||| ||||| |||    
T  12428844 atcgagtcaactcatgaaccaatcgagttgagttacatatagctcaagttcggctcatttatttaacgaacttaattttcagctcagttggttcataaac 12428943  T
Q  246 ca 247  Q
    ||    
T  12428944 ca 12428945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 10346723 - 10346763
Alignment:
Q  191 aagttcggctcgtttaaataacgaacttaattttcagctca 231  Q
    |||||| |||| ||||| |||||||||||||||||||||||    
T  10346723 aagttcagctcatttaattaacgaacttaattttcagctca 10346763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 147 - 231
Target Start/End: Original strand, 13761756 - 13761841
Alignment:
Q  147 atcgagtcaactcatgaatcaaatgagctgaagtat-tatagtttaagttcggctcgtttaaataacgaacttaattttcagctca 231  Q
    ||||||| || |||||||||||||| |||| | ||| ||||||||||||| |||||||||||| ||  ||||||||||||||||||    
T  13761756 atcgagttaaatcatgaatcaaatgtgctggaatatctatagtttaagtttggctcgtttaaaaaataaacttaattttcagctca 13761841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 9959363 - 9959399
Alignment:
Q  209 taacgaacttaattttcagctcatttgattcatgaac 245  Q
    |||||||||||||||||||||||||||||||||||||    
T  9959363 taacgaacttaattttcagctcatttgattcatgaac 9959399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 16742463 - 16742407
Alignment:
Q  191 aagttcggctcgtttaaataacgaacttaattttcagctcatttgattcatgaacca 247  Q
    |||||| |||| ||||  |||||||||||||||||| |||||||| |||||||||||    
T  16742463 aagttcagctcatttatttaacgaacttaattttcaactcatttggttcatgaacca 16742407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 36543775 - 36543823
Alignment:
Q  183 tatagtttaagttcggctcgtttaaataacgaacttaattttcagctca 231  Q
    ||||||| |||||| |||| ||||| |||||||||||||||||||||||    
T  36543775 tatagttcaagttcagctcatttaattaacgaacttaattttcagctca 36543823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 38493103 - 38493059
Alignment:
Q  203 tttaaataacgaacttaattttcagctcatttgattcatgaacca 247  Q
    ||||| |||| |||||||||||||||||||||| |||||||||||    
T  38493103 tttaattaacaaacttaattttcagctcatttggttcatgaacca 38493059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 41822105 - 41822164
Alignment:
Q  183 tatagtttaagttcggctcgtttaaataacgaacttaattttcagctcatttgattcatg 242  Q
    |||||||||||||| |||| ||||  |||| ||||||||||||| |||||||| ||||||    
T  41822105 tatagtttaagttcagctcatttagttaacaaacttaattttcaactcatttggttcatg 41822164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 9469771 - 9469819
Alignment:
Q  183 tatagtttaagttcggctcgtttaaataacgaacttaattttcagctca 231  Q
    ||||||| |||||| |||| |||||  ||||||||||||||||||||||    
T  9469771 tatagttcaagttcagctcatttaatcaacgaacttaattttcagctca 9469819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 12789690 - 12789650
Alignment:
Q  191 aagttcggctcgtttaaataacgaacttaattttcagctca 231  Q
    |||||| |||| ||||| |||||||||||||||||||||||    
T  12789690 aagttcagctcatttaattaacgaacttaattttcagctca 12789650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 19852980 - 19853020
Alignment:
Q  191 aagttcggctcgtttaaataacgaacttaattttcagctca 231  Q
    |||||| |||| ||||| |||||||||||||||||||||||    
T  19852980 aagttcagctcatttaattaacgaacttaattttcagctca 19853020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 21441583 - 21441623
Alignment:
Q  191 aagttcggctcgtttaaataacgaacttaattttcagctca 231  Q
    |||||| |||| ||||| |||||||||||||||||||||||    
T  21441583 aagttcagctcatttaattaacgaacttaattttcagctca 21441623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 26632938 - 26632978
Alignment:
Q  191 aagttcggctcgtttaaataacgaacttaattttcagctca 231  Q
    ||||||||||| ||||  |||||||||||||||||||||||    
T  26632938 aagttcggctcatttatttaacgaacttaattttcagctca 26632978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 50606010 - 50606050
Alignment:
Q  191 aagttcggctcgtttaaataacgaacttaattttcagctca 231  Q
    |||||| |||| ||||| |||||||||||||||||||||||    
T  50606010 aagttcagctcatttaattaacgaacttaattttcagctca 50606050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 53369690 - 53369730
Alignment:
Q  191 aagttcggctcgtttaaataacgaacttaattttcagctca 231  Q
    |||||| |||| ||||| |||||||||||||||||||||||    
T  53369690 aagttcagctcatttaattaacgaacttaattttcagctca 53369730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 53369874 - 53369914
Alignment:
Q  191 aagttcggctcgtttaaataacgaacttaattttcagctca 231  Q
    |||||| |||| ||||| |||||||||||||||||||||||    
T  53369874 aagttcagctcatttaattaacgaacttaattttcagctca 53369914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 39135348 - 39135396
Alignment:
Q  183 tatagtttaagttcggctcgtttaaataacgaacttaattttcagctca 231  Q
    |||||||||||||| |||| ||||| |||||||||||||||||||||||    
T  39135348 tatagtttaagttcagctcatttaattaacgaacttaattttcagctca 39135396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 46293360 - 46293311
Alignment:
Q  182 ttatagtttaagttcggctcgtttaaataacgaacttaattttcagctca 231  Q
    |||||||||||||||  ||| ||||| |||||||||||||||||||||||    
T  46293360 ttatagtttaagttcaactcatttaattaacgaacttaattttcagctca 46293311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 25253696 - 25253744
Alignment:
Q  183 tatagtttaagttcggctcgtttaaataacgaacttaattttcagctca 231  Q
    ||||| ||||||||||||| ||||  |||||||||||||||| ||||||    
T  25253696 tatagcttaagttcggctcatttatttaacgaacttaatttttagctca 25253744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 28687066 - 28687114
Alignment:
Q  183 tatagtttaagttcggctcgtttaaataacgaacttaattttcagctca 231  Q
    ||||| |||||||  |||||||||  |||||||||||||||||||||||    
T  28687066 tatagcttaagttgagctcgtttatttaacgaacttaattttcagctca 28687114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 32689171 - 32689211
Alignment:
Q  191 aagttcggctcgtttaaataacgaacttaattttcagctca 231  Q
    |||||| |||| ||||| |||||||||||||||||||||||    
T  32689171 aagttcagctcatttaattaacgaacttaattttcagctca 32689211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 41609890 - 41609930
Alignment:
Q  191 aagttcggctcgtttaaataacgaacttaattttcagctca 231  Q
    |||||| |||| ||||| |||||||||||||||||||||||    
T  41609890 aagttcagctcatttaattaacgaacttaattttcagctca 41609930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 14103234 - 14103305
Alignment:
Q  157 ctcatgaatcaaatgagctgaagtat-tatagtttaagttcggctcgtttaaataacgaacttaattttcag 227  Q
    ||||||||||||||||   ||| ||| |||||||||||||| |||| ||||| |||||||||||||||||||    
T  14103234 ctcatgaatcaaatgaatcgaaatatatatagtttaagttctgctcatttaattaacgaacttaattttcag 14103305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 26436356 - 26436396
Alignment:
Q  191 aagttcggctcgtttaaataacgaacttaattttcagctca 231  Q
    |||||| |||| ||||| |||||||||||||||||||||||    
T  26436356 aagttcagctcatttaattaacgaacttaattttcagctca 26436396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 27634673 - 27634713
Alignment:
Q  191 aagttcggctcgtttaaataacgaacttaattttcagctca 231  Q
    |||||| |||| ||||| |||||||||||||||||||||||    
T  27634673 aagttcagctcatttaattaacgaacttaattttcagctca 27634713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 33831497 - 33831537
Alignment:
Q  191 aagttcggctcgtttaaataacgaacttaattttcagctca 231  Q
    |||||| |||| ||||| |||||||||||||||||||||||    
T  33831497 aagttcagctcatttaattaacgaacttaattttcagctca 33831537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 34064707 - 34064747
Alignment:
Q  191 aagttcggctcgtttaaataacgaacttaattttcagctca 231  Q
    |||||| |||| ||||| |||||||||||||||||||||||    
T  34064707 aagttcagctcatttaattaacgaacttaattttcagctca 34064747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 241
Target Start/End: Original strand, 40680241 - 40680273
Alignment:
Q  209 taacgaacttaattttcagctcatttgattcat 241  Q
    |||||||| ||||||||||||||||||||||||    
T  40680241 taacgaacataattttcagctcatttgattcat 40680273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 38523007 - 38522959
Alignment:
Q  183 tatagtttaagttcggctcgtttaaataacgaacttaattttcagctca 231  Q
    ||||||| |||||| |||| ||||| |||||||||||||||||||||||    
T  38523007 tatagttcaagttcagctcatttaattaacgaacttaattttcagctca 38522959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 3801511 - 3801462
Alignment:
Q  182 ttatagtttaagttcggctcgtttaaataacgaacttaattttcagctca 231  Q
    |||||||| ||||||  ||| ||||| |||||||||||||||||||||||    
T  3801511 ttatagttcaagttcaactcatttaattaacgaacttaattttcagctca 3801462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 27906100 - 27906140
Alignment:
Q  191 aagttcggctcgtttaaataacgaacttaattttcagctca 231  Q
    |||||| |||| ||||| |||||||||||||||||||||||    
T  27906100 aagttcagctcatttaattaacgaacttaattttcagctca 27906140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 32157083 - 32157035
Alignment:
Q  183 tatagtttaagttcggctcgtttaaataacgaacttaattttcagctca 231  Q
    ||||||| |||||| |||| ||||| |||||||||||||||||| ||||    
T  32157083 tatagttcaagttcagctcatttaattaacgaacttaattttcaactca 32157035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 231
Target Start/End: Original strand, 7702835 - 7702877
Alignment:
Q  189 ttaagttcggctcgtttaaataacgaacttaattttcagctca 231  Q
    |||||||| |||| ||||| |||||||||||||||||||||||    
T  7702835 ttaagttcagctcatttaattaacgaacttaattttcagctca 7702877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 24469955 - 24469915
Alignment:
Q  191 aagttcggctcgtttaaataacgaacttaattttcagctca 231  Q
    |||||| |||| ||||| |||||||||||||||||||||||    
T  24469955 aagttcagctcatttaattaacgaacttaattttcagctca 24469915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 32179860 - 32179900
Alignment:
Q  191 aagttcggctcgtttaaataacgaacttaattttcagctca 231  Q
    |||||| |||| ||||| |||||||||||||||||||||||    
T  32179860 aagttcagctcatttaattaacgaacttaattttcagctca 32179900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 37441324 - 37441284
Alignment:
Q  191 aagttcggctcgtttaaataacgaacttaattttcagctca 231  Q
    |||||| |||| ||||| |||||||||||||||||||||||    
T  37441324 aagttcagctcatttaattaacgaacttaattttcagctca 37441284  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 47603000 - 47602960
Alignment:
Q  191 aagttcggctcgtttaaataacgaacttaattttcagctca 231  Q
    |||||| |||| ||||| |||||||||||||||||||||||    
T  47603000 aagttcagctcatttaattaacgaacttaattttcagctca 47602960  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 24854596 - 24854641
Alignment:
Q  186 agtttaagttcggctcgtttaaataacgaacttaattttcagctca 231  Q
    |||||| ||||||||||||||| ||||||  |||||||||||||||    
T  24854596 agtttaggttcggctcgtttaattaacgagtttaattttcagctca 24854641  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 11161574 - 11161614
Alignment:
Q  191 aagttcggctcgtttaaataacgaacttaattttcagctca 231  Q
    |||||| |||| ||||| |||||||||||||||||||||||    
T  11161574 aagttcagctcatttaattaacgaacttaattttcagctca 11161614  T

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Target: scaffold0316 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 19298 - 19338
Alignment:
Q  191 aagttcggctcgtttaaataacgaacttaattttcagctca 231  Q
    |||||| |||| ||||| |||||||||||||||||||||||    
T  19298 aagttcagctcatttaattaacgaacttaattttcagctca 19338  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 3930854 - 3930814
Alignment:
Q  191 aagttcggctcgtttaaataacgaacttaattttcagctca 231  Q
    |||||| |||| ||||| |||||||||||||||||||||||    
T  3930854 aagttcagctcatttaattaacgaacttaattttcagctca 3930814  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 5776268 - 5776228
Alignment:
Q  191 aagttcggctcgtttaaataacgaacttaattttcagctca 231  Q
    |||||| |||| ||||| |||||||||||||||||||||||    
T  5776268 aagttcagctcatttaattaacgaacttaattttcagctca 5776228  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 5795074 - 5795034
Alignment:
Q  191 aagttcggctcgtttaaataacgaacttaattttcagctca 231  Q
    |||||| |||| ||||| |||||||||||||||||||||||    
T  5795074 aagttcagctcatttaattaacgaacttaattttcagctca 5795034  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 7447875 - 7447923
Alignment:
Q  183 tatagtttaagttcggctcgtttaaataacgaacttaattttcagctca 231  Q
    ||||||| ||||||  ||| ||||| |||||||||||||||||||||||    
T  7447875 tatagttcaagttcaactcatttaattaacgaacttaattttcagctca 7447923  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 15434250 - 15434290
Alignment:
Q  191 aagttcggctcgtttaaataacgaacttaattttcagctca 231  Q
    |||||| |||| ||||| |||||||||||||||||||||||    
T  15434250 aagttcagctcatttaattaacgaacttaattttcagctca 15434290  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 23227137 - 23227097
Alignment:
Q  191 aagttcggctcgtttaaataacgaacttaattttcagctca 231  Q
    ||||||||||| ||||  |||||||||||||||||||||||    
T  23227137 aagttcggctcatttatttaacgaacttaattttcagctca 23227097  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 23236290 - 23236250
Alignment:
Q  191 aagttcggctcgtttaaataacgaacttaattttcagctca 231  Q
    ||||||||||| ||||  |||||||||||||||||||||||    
T  23236290 aagttcggctcatttatttaacgaacttaattttcagctca 23236250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 26216279 - 26216319
Alignment:
Q  191 aagttcggctcgtttaaataacgaacttaattttcagctca 231  Q
    |||||| |||| ||||| |||||||||||||||||||||||    
T  26216279 aagttcagctcctttaattaacgaacttaattttcagctca 26216319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 37334285 - 37334325
Alignment:
Q  191 aagttcggctcgtttaaataacgaacttaattttcagctca 231  Q
    |||||| |||| ||||| |||||||||||||||||||||||    
T  37334285 aagttcagctcatttaattaacgaacttaattttcagctca 37334325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 42072090 - 42072130
Alignment:
Q  191 aagttcggctcgtttaaataacgaacttaattttcagctca 231  Q
    |||||| |||| ||||| |||||||||||||||||||||||    
T  42072090 aagttcagctcatttaattaacgaacttaattttcagctca 42072130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 48505926 - 48505886
Alignment:
Q  191 aagttcggctcgtttaaataacgaacttaattttcagctca 231  Q
    |||||| |||| ||||| |||||||||||||||||||||||    
T  48505926 aagttcagctcatttaattaacgaacttaattttcagctca 48505886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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