View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0758_high_4 (Length: 433)
Name: NF0758_high_4
Description: NF0758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0758_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 29 - 424
Target Start/End: Complemental strand, 52383932 - 52383536
Alignment:
| Q |
29 |
agttttcatcccttgtatcttttggtatctaatcataggcttacaagtaacgccatgtcttgaattttacatttaccaagagggcaatttgaagctaaac |
128 |
Q |
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| T |
52383932 |
agttttcatcccttgtatcttttggtatctaatcataggcttacaagtaacgccatgtcttgaattttacatttaccaagagggcaatttgaagctaaac |
52383833 |
T |
|
| Q |
129 |
aacagcattcagggaagtagatcagcagaacaatttcaagtggaagattgacaacagtgtaatatacaattttagctgttacctggtttataaaaatcaa |
228 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52383832 |
aacaacattcagggaagtagatcagcagaacaatttcaagtggaagattgacaacagtgtaatatacaattttagctgttacctggtttataaaaatcaa |
52383733 |
T |
|
| Q |
229 |
tatactttgagaaagtgacaaggagtggctcaattttcgaagtgcctggctcatcaacctagcctgcattgccatgtgagcatcacccatctcaccatca |
328 |
Q |
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| T |
52383732 |
tatactttgagaaagtgacaaggagtggctcaattttcgaagtgcctggctcatcaacctagcctgcattgccatgtgagcatcgcccatctcaccatca |
52383633 |
T |
|
| Q |
329 |
agctcacctttaggaacaagagcagccacctatcagtgaaaagactgc-aaaatttagcagaaatgcctaaaacttataatatcatcgcacctatga |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
52383632 |
agctcacctttaggaacaagagcagccacctatcagtgaaaagactgcaaaaatttagcagaaatacctaaaacttataatatcatcgcacctatga |
52383536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 126; Significance: 8e-65; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 208 - 361
Target Start/End: Original strand, 17384560 - 17384713
Alignment:
| Q |
208 |
tacctggtttataaaaatcaatatactttgagaaagtgacaaggagtggctcaattttcgaagtgcctggctcatcaacctagcctgcattgccatgtga |
307 |
Q |
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|||||||||||||||||||||||||| || ||||||||||||||||||| |||||| ||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
17384560 |
tacctggtttataaaaatcaatatacactgtgaaagtgacaaggagtggcacaatttccgaagagcctggctcatcaacctagcttgcattgccatgtga |
17384659 |
T |
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| Q |
308 |
gcatcacccatctcaccatcaagctcacctttaggaacaagagcagccacctat |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17384660 |
gcatcacccatctcaccatcaagctcacctttaggaacaagagcagccacctat |
17384713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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