View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0758_low_12 (Length: 401)
Name: NF0758_low_12
Description: NF0758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0758_low_12 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 110 - 394
Target Start/End: Complemental strand, 32548305 - 32548021
Alignment:
| Q |
110 |
cttattattttatctttaatttgattttattcttttcacttgaatctcacaataaaagaaggtaaaacaaggtaatttgatttgttatgggagttgaaga |
209 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32548305 |
cttattattttatccttaatttgattttattcttttaacttgaatctcacaataaaagaaggtaaaacaaggtaatttgatttgttatgggagttgaaga |
32548206 |
T |
|
| Q |
210 |
aattgaatgtgtgggaaatttggagtgatgatgagtttgaaaggattttgaggaatatgctttatgtggtgtgatgatgaatgttgttgttgtttcttga |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32548205 |
aattgaatgtgtgggaaatttggagtgatgatgagtttgaaaggattttgaggaatatgctttatgtggtgtgatgatgtatgttgttgttgtttcttga |
32548106 |
T |
|
| Q |
310 |
ttgaaaattatctgcattcttctctctaattatttttcattttccagattaaagaaataaataaaaatttggatctcctatgcta |
394 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
32548105 |
ttgaaaattatctgcattcttctctctaattatttttcattttccagattaaagaaataattaaaaatttggatctcctaggcta |
32548021 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 128 - 222
Target Start/End: Original strand, 35770723 - 35770817
Alignment:
| Q |
128 |
atttgattttattcttttcacttgaatctcacaataaaagaaggtaaaacaaggtaatttgatttgttatgggagttgaagaaattgaatgtgtg |
222 |
Q |
| |
|
||||||||| |||||| ||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||| || || |||||| ||||||| |
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|
| T |
35770723 |
atttgatttgattcttctcacttgaatctcacgataatagaaggtaaaataaggtaatttgatttgttatgggaattaaataaattggatgtgtg |
35770817 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 124 - 175
Target Start/End: Original strand, 46251739 - 46251790
Alignment:
| Q |
124 |
tttaatttgattttattcttttcacttgaatctcacaataaaagaaggtaaa |
175 |
Q |
| |
|
||||||||||| | |||||| |||||| |||| ||||||||||||||||||| |
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|
| T |
46251739 |
tttaatttgatatgattcttgtcactttaatcgcacaataaaagaaggtaaa |
46251790 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 46251917 - 46251965
Alignment:
| Q |
191 |
ttgttatgggagttgaagaaattgaatgtgtgggaaatttggagtgatg |
239 |
Q |
| |
|
||||||||||| ||||||| |||||| ||||| |||| ||||||||||| |
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|
| T |
46251917 |
ttgttatgggaattgaagatattgaaggtgtgagaaaattggagtgatg |
46251965 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 110 - 394
Target Start/End: Complemental strand, 33370509 - 33370225
Alignment:
| Q |
110 |
cttattattttatctttaatttgattttattcttttcacttgaatctcacaataaaagaaggtaaaacaaggtaatttgatttgttatgggagttgaaga |
209 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
33370509 |
cttattattttatctttaatttaattttattcttttcacttgaatctcacaataaaagaaggtaaaataaggtaatttgatttgttatgggagttgaaga |
33370410 |
T |
|
| Q |
210 |
aattgaatgtgtgggaaatttggagtgatgatgagtttgaaaggattttgaggaatatgctttatgtggtgtgatgatgaatgttgttgttgtttcttga |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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|
| T |
33370409 |
aattgaatgtgtgggaaatttggagtgatgatgagtttgaaaggattttgaggaatatgctttatgtgatgtgatgatgaatgttgttgttgtttcatga |
33370310 |
T |
|
| Q |
310 |
ttgaaaattatctgcattcttctctctaattatttttcattttccagattaaagaaataaataaaaatttggatctcctatgcta |
394 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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|
| T |
33370309 |
ttgaaaattatctgcattcttctctctcattatttttcattttccagattaaaaaaataaataaaaatttggatctcctaggcta |
33370225 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 110 - 394
Target Start/End: Complemental strand, 32944118 - 32943833
Alignment:
| Q |
110 |
cttattattttatctttaatttgattttattcttttcacttgaatctcacaataaaagaaggtaaaacaaggtaatttgatttgttatgggagttgaaga |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
32944118 |
cttattattttatctttaatttgattttattcttttcacttgaatctcacaataaaagaaggtaaaataaggtaatttgatttgttatgggagttgaaga |
32944019 |
T |
|
| Q |
210 |
aattgaatgtgtgggaaatttggagtgatgatgagtttgaaagga-ttttgaggaatatgctttatgtggtgtgatgatgaatgttgttgttgtttcttg |
308 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| || |
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|
| T |
32944018 |
aattgaatgggtgggaaatttggagtgatgatgagtttgaaaggatttttgaggaatatgctttatgtgatgtgatgatgaatgttgttgttgtttcatg |
32943919 |
T |
|
| Q |
309 |
attgaaaattatctgcattcttctctctaattatttttcattttccagattaaagaaataaataaaaatttggatctcctatgcta |
394 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
32943918 |
attgaaaattatctgcattcttctctctcattatttttcattttccagattaaaaaaataaataaaaatttggatctcctaggcta |
32943833 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 128 - 214
Target Start/End: Complemental strand, 49288266 - 49288180
Alignment:
| Q |
128 |
atttgattttattcttttcacttgaatctcacaataaaagaaggtaaaacaaggtaatttgatttgttatgggagttgaagaaattg |
214 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
49288266 |
atttgattttattcttctcacttgaatctcacgataatagaaggtaaaataaggtaatttgatttgttatgggaattgaataaattg |
49288180 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 300
Target Start/End: Complemental strand, 49085949 - 49085898
Alignment:
| Q |
244 |
gtttgaaaggattttgaggaatatgctttatgtggtgtgatgatgaatgttgttgtt |
300 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
49085949 |
gtttgaaaggattttgaggaataagcttta-----tgtgatgatgaatgttgttgtt |
49085898 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 191 - 300
Target Start/End: Complemental strand, 26893806 - 26893705
Alignment:
| Q |
191 |
ttgttatgggagttgaagaaattgaatgtgtgggaaatttggagtgatgatgagtttgaaaggattttgaggaatatgctttatgtggtgtgatgatgaa |
290 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||| |||| || ||||| ||| ||||||||||||||| | | |||||||||| |
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|
| T |
26893806 |
ttgttatgggaattgaagaaattgaatgtgtaagaaatttggagt---gatgggtatgaaaagatattgaggaatatgcttca-----tatgatgatgaa |
26893715 |
T |
|
| Q |
291 |
tgttgttgtt |
300 |
Q |
| |
|
|||||||||| |
|
|
| T |
26893714 |
tgttgttgtt |
26893705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 191 - 300
Target Start/End: Complemental strand, 26899245 - 26899144
Alignment:
| Q |
191 |
ttgttatgggagttgaagaaattgaatgtgtgggaaatttggagtgatgatgagtttgaaaggattttgaggaatatgctttatgtggtgtgatgatgaa |
290 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||| |||| || ||||| ||| ||||||||||||||| | | |||||||||| |
|
|
| T |
26899245 |
ttgttatgggaattgaagaaattgaatgtgtaagaaatttggagt---gatgggtatgaaaagatattgaggaatatgcttca-----tatgatgatgaa |
26899154 |
T |
|
| Q |
291 |
tgttgttgtt |
300 |
Q |
| |
|
|||||||||| |
|
|
| T |
26899153 |
tgttgttgtt |
26899144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 4385728 - 4385788
Alignment:
| Q |
128 |
atttgattttattcttttcacttgaatctcacaataaaagaaggtaaaacaaggtaatttg |
188 |
Q |
| |
|
||||||||| |||||| |||| |||||||||| |||| ||||||||||| ||||||||||| |
|
|
| T |
4385728 |
atttgatttgattcttctcacatgaatctcacgataatagaaggtaaaataaggtaatttg |
4385788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 239
Target Start/End: Complemental strand, 6852238 - 6852190
Alignment:
| Q |
191 |
ttgttatgggagttgaagaaattgaatgtgtgggaaatttggagtgatg |
239 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
6852238 |
ttgttatgggaattgaagaaattgaatgtgtaagaaatttggagcgatg |
6852190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 124 - 175
Target Start/End: Original strand, 36234 - 36285
Alignment:
| Q |
124 |
tttaatttgattttattcttttcacttgaatctcacaataaaagaaggtaaa |
175 |
Q |
| |
|
||||||||||| | |||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
36234 |
tttaatttgatatgattcttgtcactttaatctcacaataaaagaaggtaaa |
36285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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