View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0758_low_13 (Length: 391)
Name: NF0758_low_13
Description: NF0758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0758_low_13 |
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| [»] chr5 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 29 - 391
Target Start/End: Original strand, 9055846 - 9056199
Alignment:
| Q |
29 |
aaggtgtactaagtgttgctttgaatccaactgttttctgggtgtgtcaatatgacacaatgttcttcgattttcgttagtagtatttatcatttgatta |
128 |
Q |
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| T |
9055846 |
aaggtgtactaagtgttgctttgaatccaactgttttctgggtgtgtcaatatgacacaatgttcttctattttcgttagtagtatttatcatttgatta |
9055945 |
T |
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| Q |
129 |
tctaatgagtagattctgaaaattgtagatcttttaaatgactgctgcttgttctggacttgcaggtgcttgataacatgagaagagtttgcgacttgaa |
228 |
Q |
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| T |
9055946 |
tctaatgagtagattctgaaaattgtagatcttttaaatgactgctgcttgttctggacttgcaggtgcttgataacatgagaagagtttgcgacttgaa |
9056045 |
T |
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| Q |
229 |
taaacttgagtgcaatgtaagatatcactgtaatgaagcctgttgaaaaaatttgccttttcattttaatattagaattagattagcactgtgtctatat |
328 |
Q |
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| T |
9056046 |
taaacttgagtgcaatgtaa---------gtaatgaagcctgttgaaaaaatttgccttttcattttaatattagaattagattagcactgtgtctatat |
9056136 |
T |
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| Q |
329 |
atcatgggttttctgaaaagtgattatttaacaatgattgatgttgaagtttttatctgtatc |
391 |
Q |
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| T |
9056137 |
atcatggattttctgaaaagtgattattaaacaatgattgatgttgaagtttttatctgtatc |
9056199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 9055327 - 9055377
Alignment:
| Q |
40 |
agtgttgctttgaatccaactgttttctgggtgtgtcaatatgacacaatg |
90 |
Q |
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| T |
9055327 |
agtgtagctctgaatccaactgttttctgggattgtcaatgtgacacaatg |
9055377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 227 - 391
Target Start/End: Complemental strand, 6102882 - 6102718
Alignment:
| Q |
227 |
aataaacttgagtgcaatgtaagatatcactgtaatgaagcctgttgaaaaaatttgccttttcattttaatattagaattagattagcactgtgtctat |
326 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6102882 |
aataaaattgagtgcaatgtaagatatcactgtaatgaagcctgttgaaatttttttccttttcattttaatattagagttagattagcactgtgtctat |
6102783 |
T |
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| Q |
327 |
atatcatgggttttctgaaaagtgattatttaacaatgattgatgttgaagtttttatctgtatc |
391 |
Q |
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| T |
6102782 |
atatcatggattttctgtaaagtgattattaaacaatggttgacattgaagtttttatttgtatc |
6102718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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