View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0758_low_15 (Length: 378)
Name: NF0758_low_15
Description: NF0758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0758_low_15 |
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| [»] scaffold0171 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 17998766 - 17999060
Alignment:
| Q |
1 |
aatggattgatttacatatactttaatgacttaattgacggattttgtatcgtgtaaggactatttgaaatatatttatagtttatggactaaattgaag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17998766 |
aatggattgatttacatatactttaatgacttaattgacggattttgtatagtgtaaggactatttgaaatatatttatagtttatggactaaattgaag |
17998865 |
T |
|
| Q |
101 |
gtccacaaatgtcatcaagtctcattgttttgtatttataataacatgttgaagtaagaatgaatctatgaatgatgaatgtttaatatgttggttagca |
200 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17998866 |
gtccataaatgtcatcaagtctcattgttttgtatttataataacatgttgcagtaagaatgaatctatgaatgatgaatgtttaatatgttggttagca |
17998965 |
T |
|
| Q |
201 |
tgatgtggttgattgctcgtcttctatgtaaattgtgttttgagaaacgatgttgctccttgtggtgataattgttgatgatgaatatgatgatg |
295 |
Q |
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| T |
17998966 |
tgatgtggttgattgctcgtcttctatgtaaattgtgttttgagaaacgatgttgctccttgtggtgataattgttgatgataaatatgatgatg |
17999060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 150 - 276
Target Start/End: Complemental strand, 4549031 - 4548905
Alignment:
| Q |
150 |
tgaagtaagaatgaatctatgaatgatgaatgtttaatatgttggttagcatgatgtggttgattgctcgtcttctatgtaaattgtgttttgagaaacg |
249 |
Q |
| |
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|||| |||||||||||| |||| ||||| ||| ||||||||||||| |||| |||||||||||| |||||| ||||| ||||||| ||| || ||| |
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| T |
4549031 |
tgaaataagaatgaatcaatgatggatgagtgtaaaatatgttggttatcatgttgtggttgattgttcgtctattatgttaattgtgctttatgagacg |
4548932 |
T |
|
| Q |
250 |
atgttgctccttgtggtgataattgtt |
276 |
Q |
| |
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||||| ||| |||||||||||||||| |
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| T |
4548931 |
atgttattccgtgtggtgataattgtt |
4548905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 130 - 295
Target Start/End: Complemental strand, 3704 - 3538
Alignment:
| Q |
130 |
ttgtatttataataacatgttgaagtaagaatgaatctatgaatgatgaatgtttaatatgttggttagcatgatgtggttgattgctcgtcttctatgt |
229 |
Q |
| |
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||||||| || |||| ||| |||| |||||||||||| |||| ||||| ||| |||||||||| ||| ||||||||||| ||||| |||| |||| |
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| T |
3704 |
ttgtattcatgataatatgatgaaataagaatgaatcaatgattgatgggtgtataatatgttgtttatcatgatgtggtcgattgtatgtctattatgc |
3605 |
T |
|
| Q |
230 |
aaattgtgttttgagaaacgatgttg-ctccttgtggtgataattgttgatgatgaatatgatgatg |
295 |
Q |
| |
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|||||||| || ||||| |||||| |||||||||||||||||| ||||||||| |||||||||| |
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|
| T |
3604 |
aaattgtgccttatgaaacaatgttgtttccttgtggtgataattgatgatgatgattatgatgatg |
3538 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 184 - 295
Target Start/End: Original strand, 21093850 - 21093962
Alignment:
| Q |
184 |
taatatgttggttagcatgatgtggttgattgctcgtcttctatgtaaattgtgttttgagaaacgatgttgct-ccttgtggtgataattgttgatgat |
282 |
Q |
| |
|
|||||||||| ||| ||||||||||| ||| |||| || ||| | ||||| |||| |||||||||||||| ||||||||||||||||||| ||||| |
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| T |
21093850 |
taatatgttgtttatcatgatgtggtgatttgttcgttttttatacgatttgtgctttgtgaaacgatgttgcttccttgtggtgataattgttaatgat |
21093949 |
T |
|
| Q |
283 |
gaatatgatgatg |
295 |
Q |
| |
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||||||| ||||| |
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| T |
21093950 |
gaatatgttgatg |
21093962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 141 - 276
Target Start/End: Original strand, 29650530 - 29650666
Alignment:
| Q |
141 |
ataacatgttgaagtaagaatgaatctatgaatgatgaatgtttaatatgttggttagcatgatgtggttgattgctcgtcttctatgtaaattgtgttt |
240 |
Q |
| |
|
|||||||| |||| |||||||||||| |||| ||| | |||| ||||||||||| | |||||||||| |||||| ||||| ||||| ||||||| || |
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| T |
29650530 |
ataacatgatgaaataagaatgaatcaatgagtgacggatgtataatatgttgggtgtcatgatgtgggtgattgtccgtctattatgtgaattgtgctt |
29650629 |
T |
|
| Q |
241 |
tgagaaacgatgttg-ctccttgtggtgataattgtt |
276 |
Q |
| |
|
| |||||| |||||| | ||| |||||||||||||| |
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| T |
29650630 |
taagaaacaatgttgttttcttatggtgataattgtt |
29650666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 25386330 - 25386391
Alignment:
| Q |
155 |
taagaatgaatctatgaatgatgaatgtttaatatgttggttagcatgatgtggttgattgc |
216 |
Q |
| |
|
|||||||||||| |||| | |||| ||| ||| || ||||||||||||||||| |||||||| |
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|
| T |
25386330 |
taagaatgaatcaatgactaatgagtgtataaaattttggttagcatgatgtgtttgattgc |
25386391 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 295
Target Start/End: Original strand, 13121975 - 13122142
Alignment:
| Q |
129 |
tttgtatttataataacatgttgaagtaagaatgaatctatgaatgatgaatgtttaatatgttggttagcatgatgtggttgattgctcgtcttctatg |
228 |
Q |
| |
|
|||||||| || |||| ||| |||| ||||||||||| ||| ||||| ||| || |||||||||| |||||| ||| |||||| ||||| |||| |
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| T |
13121975 |
tttgtattcatgataatatgatgaaataagaatgaattgatggttgatgggtgtatattatgttggttctcatgatatggatgattgtccgtctattatg |
13122074 |
T |
|
| Q |
229 |
taaattgtgttttgagaaacgatgttg-ctccttgtggtgataattgttgatgatgaatatgatgatg |
295 |
Q |
| |
|
| | ||||| |||| | |||||||||| |||||| |||| ||||||||| |||||| |||||||||| |
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|
| T |
13122075 |
tgacttgtgctttgtggaacgatgttgtttccttgaggtgctaattgttggtgatgattatgatgatg |
13122142 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 267
Target Start/End: Complemental strand, 22457428 - 22457291
Alignment:
| Q |
130 |
ttgtatttataataacatgttgaagtaagaatgaatctatgaatgatgaatgtttaatatgttggttagcatgatgtggttgattgctcgtcttctatgt |
229 |
Q |
| |
|
||||||| || |||| ||| |||| |||||||||||| |||| | || | ||| |||||||||||||| ||||||||| |||||| |||||| |||| |
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|
| T |
22457428 |
ttgtattcatgataatatgatgaaataagaatgaatcaatgatttattagtgtataatatgttggttatcatgatgtgattgatt-ttcgtctattatgc |
22457330 |
T |
|
| Q |
230 |
aaattgtgttttgagaaacgatgttg-ctccttgtggtg |
267 |
Q |
| |
|
||||||| |||| |||||||| ||| ||||||||||| |
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|
| T |
22457329 |
gaattgtgctttgtgaaacgatattgtttccttgtggtg |
22457291 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 284
Target Start/End: Original strand, 22786068 - 22786211
Alignment:
| Q |
141 |
ataacatgttgaagtaagaatgaatctatgaatgatgaatgtttaatatgttggttagcatgatgtggttgattgctcgtcttctatgtaaattgtgttt |
240 |
Q |
| |
|
|||||||| |||| |||||||||||| |||||||||| ||| |||||| |||| || | |||||| | |||||| |||||| |||| |||||||| || |
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|
| T |
22786068 |
ataacatgatgaaataagaatgaatcaatgaatgatgggtgtataatattttggatatcctgatgtagatgattg-tcgtctattatgcaaattgtgctt |
22786166 |
T |
|
| Q |
241 |
tgagaaacgatgttg-ctccttgtggtgataattgttgatgatga |
284 |
Q |
| |
|
| |||||| | ||| ||||||| || |||| |||||||||||| |
|
|
| T |
22786167 |
tttgaaacgttattgtttccttgtcgtaataaatgttgatgatga |
22786211 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 284
Target Start/End: Original strand, 14486880 - 14486984
Alignment:
| Q |
180 |
tgtttaatatgttggttagcatgatgtggttgattgctcgtcttctatgtaaattgtgttttgagaaacgatgttgctccttgtggtgataattgttgat |
279 |
Q |
| |
|
|||||||||||||| ||| || |||||||||||| ||||| ||||| || |||| |||| ||||| |||||| | ||| |||||||||||||||| |
|
|
| T |
14486880 |
tgtttaatatgttgtttatgattatgtggttgattttccgtctattatgtgaaatgtgctttgtgaaacaatgttgtttctttaggtgataattgttgat |
14486979 |
T |
|
| Q |
280 |
gatga |
284 |
Q |
| |
|
|||| |
|
|
| T |
14486980 |
aatga |
14486984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 295
Target Start/End: Complemental strand, 13933751 - 13933597
Alignment:
| Q |
141 |
ataacatgttgaagtaagaatgaatctatgaatgatgaatgtttaatatgttggttagcatgatgtggttgattgctcgtcttctatgtaaattgtgttt |
240 |
Q |
| |
|
|||| ||| |||| |||||||||| | |||| || || ||||| |||||| ||||| ||||||||| ||| ||| ||||||| |||| |||||| || |
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|
| T |
13933751 |
ataatatgatgaaataagaatgaaaccatgattgttgggtgtttgatatgtcggttatcatgatgtgattgtttg-tcgtcttttatgcggattgtgctt |
13933653 |
T |
|
| Q |
241 |
tgagaaacgatgttgct-ccttgtggtgataattgttgatgatgaatatgatgatg |
295 |
Q |
| |
|
|| |||||||||||| | || |||| |||||||| ||||| |||||||||||||| |
|
|
| T |
13933652 |
tgtgaaacgatgttgtttccctgtgatgataattattgatattgaatatgatgatg |
13933597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 284
Target Start/End: Complemental strand, 17378767 - 17378714
Alignment:
| Q |
231 |
aattgtgttttgagaaacgatgttgctccttgtggtgataattgttgatgatga |
284 |
Q |
| |
|
|||||||||||| |||||||||||| | ||||||| |||| |||||||||||| |
|
|
| T |
17378767 |
aattgtgttttgtgaaacgatgttgtttcttgtggcaataaatgttgatgatga |
17378714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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