View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0758_low_16 (Length: 366)
Name: NF0758_low_16
Description: NF0758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0758_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 20 - 358
Target Start/End: Original strand, 27584207 - 27584540
Alignment:
| Q |
20 |
gacatcatcaacaagggagattctatctgctgctctccgaatatatgcattagtaccatggtggaattaatagaatcattgactaagcagcaagaattat |
119 |
Q |
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| T |
27584207 |
gacatcatcaacaagggagattctatctgctgctctccgaatatatgcattagtaccatggtggaattaatagaatcattgactaagcagcaagaactat |
27584306 |
T |
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| Q |
120 |
gatcaagatgagaagcacaatcccaaatatgaccaaaagcaagcatgccttaagaacaggnnnnnnnncacaaaattagcaatcaaggatgcacaatgct |
219 |
Q |
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| T |
27584307 |
gatcaagatgagaagcacaatcccaaatatgaccaaaagcaagcatgccttaagaacag--aaaaaaacacaaaattagcaatcaaggatgcacaatgct |
27584404 |
T |
|
| Q |
220 |
ttgaaagagnnnnnnnnnnngtaagtgaaatcattaatcaagacggtgaacaagaacaatcaaagtgatagaaaatggtccccaaattcccttctcacac |
319 |
Q |
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| T |
27584405 |
ttgaaagag---aaaaaaaagtaagtgaaatcattaatcaagacggtgaacaagaacaatcaaagtgatagaaaatggtccccaaattcccttctcacac |
27584501 |
T |
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| Q |
320 |
acctcataaatcctccccactccatgtgtgtttcatctc |
358 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |
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| T |
27584502 |
acctcataaatcctccccactccatgtgtgtttcttctc |
27584540 |
T |
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