View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0758_low_17 (Length: 358)
Name: NF0758_low_17
Description: NF0758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0758_low_17 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 12 - 358
Target Start/End: Complemental strand, 14598212 - 14597864
Alignment:
| Q |
12 |
atgaagatgatgaagcatttgaaggagactggggctgaccctttggagcctgttaaagtattaaaggccacttggatggctgatggcacccattggcccg |
111 |
Q |
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| T |
14598212 |
atgaagatgatgaagcatttgaaggagactggggctgaccctttggagcctgttaaagtattgaaggccacttggatggctgatggcacccattggcccg |
14598113 |
T |
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| Q |
112 |
gcacttggggttcttcttctagggaacatgctaaaggtgaccatgccggaatacttcaggtatttactcatatat--tatacctaagaataaattcaatc |
209 |
Q |
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| T |
14598112 |
gcacttggggttcttcttctagcgaacatgctaaaggtgaccatgccggaatacttcaggtatttactcatatattatatatctaagaataaattcaatc |
14598013 |
T |
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| Q |
210 |
ctgaactttaacttatgtttcacatatatatcataatttaaatgcatgcatgtatataaataggttatgttgaagccgcccagtcccgatccattaatgg |
309 |
Q |
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| T |
14598012 |
ctgaactttaacttatgtttcacatatatttcataatttaaatgcatgcatgtatataaataggtgatgttgaagccgcccagccctgatccgttaatgg |
14597913 |
T |
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| Q |
310 |
gcagtgcagacgacaagatcatagatttctctgaggtagatacacgttt |
358 |
Q |
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| T |
14597912 |
gaagtgaagacgacaagatcatagatttctctgaggtagatacacgttt |
14597864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 12 - 204
Target Start/End: Original strand, 14610264 - 14610456
Alignment:
| Q |
12 |
atgaagatgatgaagcatttgaaggagactggggctgaccctttggagcctgttaaagtattaaaggccacttggatggctgatggcacccattggcccg |
111 |
Q |
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| T |
14610264 |
atgaagaagatgaagcaattcaaggagagtggggctgatccttctaagcctatcaaggtaataaaggctacctggatggctgatggcacccattggcctg |
14610363 |
T |
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| Q |
112 |
gcacttggggttcttcttctagggaacatgctaaaggtgaccatgccggaatacttcaggtatttactcatatattatacctaagaataaatt |
204 |
Q |
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| T |
14610364 |
gtacgtgggcttcttcttctagcgaacatgctaaaggtgaccattctggaatacttcaggtattttcttgtgtattatatctaagaataaatt |
14610456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 358
Target Start/End: Original strand, 14610517 - 14610641
Alignment:
| Q |
234 |
tatatatcataatttaaatgcatgcatgtatataaataggttatgttgaagccgcccagtcccgatccattaatgggcagtgcagacgacaagatcatag |
333 |
Q |
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| T |
14610517 |
tatatatcttaatttaactatatgcgtgtatatgagtaggtgatgctaaagcctccaagtcctgatccattaacgcgaagtgcaaacaacaacatcattg |
14610616 |
T |
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| Q |
334 |
atttctctgaggtagatacacgttt |
358 |
Q |
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| T |
14610617 |
atttcagtgacgtagatacacgttt |
14610641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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