View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0758_low_20 (Length: 342)

Name: NF0758_low_20
Description: NF0758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0758_low_20
NF0758_low_20
[»] scaffold0055 (38 HSPs)
scaffold0055 (87-193)||(11333-11439)
scaffold0055 (87-182)||(29985-30080)
scaffold0055 (87-182)||(11172-11267)
scaffold0055 (87-238)||(30104-30254)
scaffold0055 (87-182)||(18680-18775)
scaffold0055 (87-182)||(36570-36665)
scaffold0055 (87-182)||(44232-44327)
scaffold0055 (87-182)||(56957-57052)
scaffold0055 (87-182)||(75619-75714)
scaffold0055 (244-323)||(75994-76073)
scaffold0055 (248-323)||(18321-18396)
scaffold0055 (248-323)||(23529-23604)
scaffold0055 (248-323)||(44611-44686)
scaffold0055 (248-323)||(57336-57411)
scaffold0055 (244-323)||(10812-10891)
scaffold0055 (237-323)||(29625-29711)
scaffold0055 (87-163)||(12436-12512)
scaffold0055 (264-323)||(20306-20365)
scaffold0055 (97-163)||(43197-43263)
scaffold0055 (97-163)||(55911-55977)
scaffold0055 (97-163)||(74583-74649)
scaffold0055 (97-163)||(19756-19822)
scaffold0055 (87-163)||(34401-34477)
scaffold0055 (87-163)||(35525-35601)
scaffold0055 (87-163)||(53573-53649)
scaffold0055 (248-282)||(36949-36983)
scaffold0055 (261-303)||(12579-12621)
scaffold0055 (205-238)||(18799-18832)
scaffold0055 (205-238)||(36513-36546)
scaffold0055 (205-238)||(44175-44208)
scaffold0055 (205-238)||(56900-56933)
scaffold0055 (205-237)||(19838-19870)
scaffold0055 (205-237)||(34344-34376)
scaffold0055 (205-237)||(35468-35500)
scaffold0055 (205-237)||(43149-43181)
scaffold0055 (205-237)||(53516-53548)
scaffold0055 (205-237)||(55863-55895)
scaffold0055 (205-237)||(74535-74567)
[»] scaffold0052 (36 HSPs)
scaffold0052 (87-193)||(73096-73202)
scaffold0052 (87-182)||(65985-66080)
scaffold0052 (87-182)||(73268-73363)
scaffold0052 (87-238)||(65811-65961)
scaffold0052 (87-182)||(2562-2657)
scaffold0052 (87-182)||(17098-17193)
scaffold0052 (87-182)||(40579-40674)
scaffold0052 (87-182)||(42522-42617)
scaffold0052 (87-182)||(54561-54656)
scaffold0052 (244-323)||(42897-42976)
scaffold0052 (248-323)||(8518-8593)
scaffold0052 (248-323)||(20533-20608)
scaffold0052 (248-323)||(40220-40295)
scaffold0052 (248-323)||(54940-55015)
scaffold0052 (244-323)||(73644-73723)
scaffold0052 (237-323)||(66354-66440)
scaffold0052 (87-163)||(72023-72099)
scaffold0052 (248-294)||(2232-2278)
scaffold0052 (97-163)||(3638-3704)
scaffold0052 (97-163)||(30308-30374)
scaffold0052 (97-163)||(41654-41720)
scaffold0052 (97-163)||(53517-53583)
scaffold0052 (97-163)||(18163-18229)
scaffold0052 (87-163)||(61587-61663)
scaffold0052 (248-282)||(16780-16814)
scaffold0052 (261-303)||(71914-71956)
scaffold0052 (205-238)||(2681-2714)
scaffold0052 (205-238)||(17217-17250)
scaffold0052 (205-238)||(40698-40731)
scaffold0052 (205-238)||(54504-54537)
scaffold0052 (205-237)||(3720-3752)
scaffold0052 (205-237)||(18245-18277)
scaffold0052 (205-237)||(30260-30292)
scaffold0052 (205-237)||(41736-41768)
scaffold0052 (205-237)||(53469-53501)
scaffold0052 (205-237)||(61688-61720)
[»] scaffold0021 (13 HSPs)
scaffold0021 (87-193)||(51404-51510)
scaffold0021 (88-194)||(40899-41005)
scaffold0021 (87-238)||(40724-40874)
scaffold0021 (87-182)||(51576-51671)
scaffold0021 (86-169)||(41063-41146)
scaffold0021 (86-162)||(39258-39334)
scaffold0021 (113-162)||(34511-34560)
scaffold0021 (97-163)||(49189-49255)
scaffold0021 (109-163)||(50287-50341)
scaffold0021 (89-163)||(95798-95872)
scaffold0021 (205-238)||(40667-40700)
scaffold0021 (205-237)||(49141-49173)
scaffold0021 (205-237)||(95739-95771)
[»] scaffold1084 (1 HSPs)
scaffold1084 (87-172)||(2870-2955)
[»] scaffold0515 (3 HSPs)
scaffold0515 (87-182)||(10620-10715)
scaffold0515 (87-163)||(11684-11760)
scaffold0515 (275-319)||(10507-10551)
[»] scaffold0152 (9 HSPs)
scaffold0152 (87-182)||(28240-28335)
scaffold0152 (87-182)||(37016-37111)
scaffold0152 (87-182)||(18188-18283)
scaffold0152 (87-163)||(19254-19330)
scaffold0152 (87-163)||(33382-33458)
scaffold0152 (87-163)||(38080-38156)
scaffold0152 (275-319)||(18074-18118)
scaffold0152 (275-319)||(28127-28171)
scaffold0152 (275-319)||(36903-36947)
[»] chr5 (2 HSPs)
chr5 (88-163)||(21098509-21098584)
chr5 (260-303)||(18966696-18966739)
[»] chr8 (3 HSPs)
chr8 (258-303)||(28992023-28992068)
chr8 (263-303)||(24536338-24536378)
chr8 (263-303)||(24536761-24536801)
[»] chr3 (1 HSPs)
chr3 (260-298)||(26267918-26267956)
[»] chr1 (1 HSPs)
chr1 (258-287)||(47356668-47356697)
[»] chr6 (1 HSPs)
chr6 (87-163)||(9477454-9477530)


Alignment Details
Target: scaffold0055 (Bit Score: 99; Significance: 8e-49; HSPs: 38)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 87 - 193
Target Start/End: Complemental strand, 11439 - 11333
Alignment:
Q  87 ggacatcatcaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcgccagaaagtcaagaaagcgcaaa 186  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11439 ggacatcataaggaccttcactgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcgccagaaagtcaagaaagcgcaaa 11340  T
Q  187 atcgcaa 193  Q
    |||||||    
T  11339 atcgcaa 11333  T

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Target: scaffold0055; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 87 - 182
Target Start/End: Complemental strand, 30080 - 29985
Alignment:
Q  87 ggacatcatcaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcgccagaaagtcaagaaagcg 182  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30080 ggacatcataaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgtaaactgcgaatattttaagcgccagaaagtcaagaaagcg 29985  T

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Target: scaffold0055; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 87 - 182
Target Start/End: Complemental strand, 11267 - 11172
Alignment:
Q  87 ggacatcatcaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcgccagaaagtcaagaaagcg 182  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11267 ggacatcataaggaccttcaccgagaaattttggcaattttgcatgcgggaatcgttaactgcgaatattttaagcgccagaaagtcatgaaagcg 11172  T

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Target: scaffold0055; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 87 - 238
Target Start/End: Complemental strand, 30254 - 30104
Alignment:
Q  87 ggacatcatcaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcgccagaaagtcaagaaagcgcaaa 186  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||| |||    
T  30254 ggacatcataaggaccttcaccgagaaatttgggcaattttgcacgcgggaatcgtcaactgcgaatattctaagcgccagaaagtcatgaaagcggaaa 30155  T
Q  187 atcgcaacnnnnnnnnnncaaatgagcacccatccacggcacgaatcttgtt 238  Q
    ||| || |          ||||||||||||||||||||| ||||||||||||    
T  30154 atcacagc-tttttttttcaaatgagcacccatccacgggacgaatcttgtt 30104  T

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Target: scaffold0055; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 87 - 182
Target Start/End: Complemental strand, 18775 - 18680
Alignment:
Q  87 ggacatcatcaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcgccagaaagtcaagaaagcg 182  Q
    ||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18775 ggacatcgtaaggaccttctccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatatcttaagcgccagaaagtcaagaaagcg 18680  T

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Target: scaffold0055; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 87 - 182
Target Start/End: Original strand, 36570 - 36665
Alignment:
Q  87 ggacatcatcaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcgccagaaagtcaagaaagcg 182  Q
    ||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  36570 ggacatcgtaaggaccttctccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatatcttaagcgccagaaagtcaagaaagcg 36665  T

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Target: scaffold0055; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 87 - 182
Target Start/End: Original strand, 44232 - 44327
Alignment:
Q  87 ggacatcatcaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcgccagaaagtcaagaaagcg 182  Q
    ||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  44232 ggacatcgtaaggaccttctccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatatcttaagcgccagaaagtcaagaaagcg 44327  T

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Target: scaffold0055; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 87 - 182
Target Start/End: Original strand, 56957 - 57052
Alignment:
Q  87 ggacatcatcaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcgccagaaagtcaagaaagcg 182  Q
    ||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  56957 ggacatcgtaaggaccttctccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatatcttaagcgccagaaagtcaagaaagcg 57052  T

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Target: scaffold0055; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 87 - 182
Target Start/End: Original strand, 75619 - 75714
Alignment:
Q  87 ggacatcatcaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcgccagaaagtcaagaaagcg 182  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  75619 ggacatcataaggaccttctccgagaaattttggcaattttgcacgtgggaatcgttaactgcgaatatcttaagcgccagaaagtcaagaaagcg 75714  T

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Target: scaffold0055; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 244 - 323
Target Start/End: Original strand, 75994 - 76073
Alignment:
Q  244 tgaattctccgcgcgcctcgatttattttgatttttcgaccaaagagtgcaaaatcgcaagtacgtaggtggacgtttga 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  75994 tgaattctccgcgcgcctcgatttattttgatttttcgaccaaagagtgcaaaatcgcaagaacgtaggtggacgtttga 76073  T

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Target: scaffold0055; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 248 - 323
Target Start/End: Complemental strand, 18396 - 18321
Alignment:
Q  248 ttctccgcgcgcctcgatttattttgatttttcgaccaaagagtgcaaaatcgcaagtacgtaggtggacgtttga 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18396 ttctccgcgcgcctcgatttattttgatttttcgaccaaagagtgcaaaatcgcaagaacgtaggtggacgtttga 18321  T

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Target: scaffold0055; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 248 - 323
Target Start/End: Original strand, 23529 - 23604
Alignment:
Q  248 ttctccgcgcgcctcgatttattttgatttttcgaccaaagagtgcaaaatcgcaagtacgtaggtggacgtttga 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  23529 ttctccgcgcgcctcgatttattttgatttttcgaccaaagagtgcaaaatcgcaagaacgtaggtggacgtttga 23604  T

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Target: scaffold0055; HSP #13
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 248 - 323
Target Start/End: Original strand, 44611 - 44686
Alignment:
Q  248 ttctccgcgcgcctcgatttattttgatttttcgaccaaagagtgcaaaatcgcaagtacgtaggtggacgtttga 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  44611 ttctccgcgcgcctcgatttattttgatttttcgaccaaagagtgcaaaatcgcaagaacgtaggtggacgtttga 44686  T

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Target: scaffold0055; HSP #14
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 248 - 323
Target Start/End: Original strand, 57336 - 57411
Alignment:
Q  248 ttctccgcgcgcctcgatttattttgatttttcgaccaaagagtgcaaaatcgcaagtacgtaggtggacgtttga 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  57336 ttctccgcgcgcctcgatttattttgatttttcgaccaaagagtgcaaaatcgcaagaacgtaggtggacgtttga 57411  T

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Target: scaffold0055; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 244 - 323
Target Start/End: Complemental strand, 10891 - 10812
Alignment:
Q  244 tgaattctccgcgcgcctcgatttattttgatttttcgaccaaagagtgcaaaatcgcaagtacgtaggtggacgtttga 323  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||    
T  10891 tgaattctccgcgcgcctcgatttattttgattttccgacgaaagagtgcaaaatcgcaagaacgtaggtggacgtttga 10812  T

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Target: scaffold0055; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 237 - 323
Target Start/End: Complemental strand, 29711 - 29625
Alignment:
Q  237 ttaactatgaattctccgcgcgcctcgatttattttgatttttcgaccaaagagtgcaaaatcgcaagtacgtaggtggacgtttga 323  Q
    |||| ||||||||||| ||||| |||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29711 ttaaatatgaattctctgcgcggctcgatttatcttaatttttcgaccaaagagtgcaaaatcgcaagaacgtaggtggacgtttga 29625  T

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Target: scaffold0055; HSP #17
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 12512 - 12436
Alignment:
Q  87 ggacatcatcaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||||| ||||||| || ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  12512 ggacatcataaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 12436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #18
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 323
Target Start/End: Original strand, 20306 - 20365
Alignment:
Q  264 atttattttgatttttcgaccaaagagtgcaaaatcgcaagtacgtaggtggacgtttga 323  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  20306 atttattttgatttttcgaccaaagagtgcaaaatcgcaagaacgtaggtggacgtttga 20365  T

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Target: scaffold0055; HSP #19
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 97 - 163
Target Start/End: Original strand, 43197 - 43263
Alignment:
Q  97 aggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||| || |||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||    
T  43197 aggacctccagcgagaaattttggcaaatttgcacgcgggattcgttaattgcgaatattttaagcg 43263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #20
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 97 - 163
Target Start/End: Original strand, 55911 - 55977
Alignment:
Q  97 aggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||| || |||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||    
T  55911 aggacctccagcgagaaattttggcaaatttgcacgcgggattcgttaattgcgaatattttaagcg 55977  T

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Target: scaffold0055; HSP #21
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 97 - 163
Target Start/End: Original strand, 74583 - 74649
Alignment:
Q  97 aggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||| || |||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||    
T  74583 aggacctccagcgagaaattttggcaaatttgcacgcgggattcgttaattgcgaatattttaagcg 74649  T

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Target: scaffold0055; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 97 - 163
Target Start/End: Complemental strand, 19822 - 19756
Alignment:
Q  97 aggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||| || ||||||||||||| || ||||||||||||| ||||||| ||| |||||||||||||    
T  19822 aggacctccagcgagaaattttggaaaatttgcacgcgggattcgttaattgccaatattttaagcg 19756  T

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Target: scaffold0055; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 34401 - 34477
Alignment:
Q  87 ggacatcatcaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||| | ||||||| || ||||||||||| |||| ||| |||| |||| ||||||| |||||||||||||||||    
T  34401 ggacatcgtaaggacctccagcgagaaattttagcaaattttcacgtgggattcgttaattgcgaatattttaagcg 34477  T

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Target: scaffold0055; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 35525 - 35601
Alignment:
Q  87 ggacatcatcaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||| | ||||||| || ||||||||||| |||| ||| |||| |||| ||||||| |||||||||||||||||    
T  35525 ggacatcgtaaggacctccagcgagaaattttagcaaattttcacgtgggattcgttaattgcgaatattttaagcg 35601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 53573 - 53649
Alignment:
Q  87 ggacatcatcaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||| | ||||||| || ||||||||||| |||| ||| |||| |||| ||||||| |||||||||||||||||    
T  53573 ggacatcgtaaggacctccagcgagaaattttagcaaattttcacgtgggattcgttaattgcgaatattttaagcg 53649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 282
Target Start/End: Original strand, 36949 - 36983
Alignment:
Q  248 ttctccgcgcgcctcgatttattttgatttttcga 282  Q
    |||||||||||||||||||||||||||||||||||    
T  36949 ttctccgcgcgcctcgatttattttgatttttcga 36983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 303
Target Start/End: Complemental strand, 12621 - 12579
Alignment:
Q  261 tcgatttattttgatttttcgaccaaagagtgcaaaatcgcaa 303  Q
    |||||||||||||||||||||||| ||  ||||||||||||||    
T  12621 tcgatttattttgatttttcgaccgaaacgtgcaaaatcgcaa 12579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 238
Target Start/End: Complemental strand, 18832 - 18799
Alignment:
Q  205 caaatgagcacccatccacggcacgaatcttgtt 238  Q
    ||||||||||||||||||||| ||||||||||||    
T  18832 caaatgagcacccatccacgggacgaatcttgtt 18799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 238
Target Start/End: Original strand, 36513 - 36546
Alignment:
Q  205 caaatgagcacccatccacggcacgaatcttgtt 238  Q
    ||||||||||||||||||||| ||||||||||||    
T  36513 caaatgagcacccatccacgggacgaatcttgtt 36546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 238
Target Start/End: Original strand, 44175 - 44208
Alignment:
Q  205 caaatgagcacccatccacggcacgaatcttgtt 238  Q
    ||||||||||||||||||||| ||||||||||||    
T  44175 caaatgagcacccatccacgggacgaatcttgtt 44208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 238
Target Start/End: Original strand, 56900 - 56933
Alignment:
Q  205 caaatgagcacccatccacggcacgaatcttgtt 238  Q
    ||||||||||||||||||||| ||||||||||||    
T  56900 caaatgagcacccatccacgggacgaatcttgtt 56933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 19870 - 19838
Alignment:
Q  205 caaatgagcacccatccacggcacgaatcttgt 237  Q
    ||||||||||||||||||||| |||||||||||    
T  19870 caaatgagcacccatccacgggacgaatcttgt 19838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 34344 - 34376
Alignment:
Q  205 caaatgagcacccatccacggcacgaatcttgt 237  Q
    ||||||||||||||||||||| |||||||||||    
T  34344 caaatgagcacccatccacgggacgaatcttgt 34376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 35468 - 35500
Alignment:
Q  205 caaatgagcacccatccacggcacgaatcttgt 237  Q
    ||||||||||||||||||||| |||||||||||    
T  35468 caaatgagcacccatccacgggacgaatcttgt 35500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 43149 - 43181
Alignment:
Q  205 caaatgagcacccatccacggcacgaatcttgt 237  Q
    ||||||||||||||||||||| |||||||||||    
T  43149 caaatgagcacccatccacgggacgaatcttgt 43181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 53516 - 53548
Alignment:
Q  205 caaatgagcacccatccacggcacgaatcttgt 237  Q
    ||||||||||||||||||||| |||||||||||    
T  53516 caaatgagcacccatccacgggacgaatcttgt 53548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 55863 - 55895
Alignment:
Q  205 caaatgagcacccatccacggcacgaatcttgt 237  Q
    ||||||||||||||||||||| |||||||||||    
T  55863 caaatgagcacccatccacgggacgaatcttgt 55895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 74535 - 74567
Alignment:
Q  205 caaatgagcacccatccacggcacgaatcttgt 237  Q
    ||||||||||||||||||||| |||||||||||    
T  74535 caaatgagcacccatccacgggacgaatcttgt 74567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052 (Bit Score: 99; Significance: 8e-49; HSPs: 36)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 87 - 193
Target Start/End: Original strand, 73096 - 73202
Alignment:
Q  87 ggacatcatcaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcgccagaaagtcaagaaagcgcaaa 186  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  73096 ggacatcataaggaccttcactgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcgccagaaagtcaagaaagcgcaaa 73195  T
Q  187 atcgcaa 193  Q
    |||||||    
T  73196 atcgcaa 73202  T

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Target: scaffold0052; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 87 - 182
Target Start/End: Original strand, 65985 - 66080
Alignment:
Q  87 ggacatcatcaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcgccagaaagtcaagaaagcg 182  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  65985 ggacatcataaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgtaaactgcgaatattttaagcgccagaaagtcaagaaagcg 66080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 87 - 182
Target Start/End: Original strand, 73268 - 73363
Alignment:
Q  87 ggacatcatcaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcgccagaaagtcaagaaagcg 182  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  73268 ggacatcataaggaccttcaccgagaaattttggcaattttgcatgcgggaatcgttaactgcgaatattttaagcgccagaaagtcatgaaagcg 73363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 87 - 238
Target Start/End: Original strand, 65811 - 65961
Alignment:
Q  87 ggacatcatcaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcgccagaaagtcaagaaagcgcaaa 186  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||| |||    
T  65811 ggacatcataaggaccttcaccgagaaatttgggcaattttgcacgcgggaatcgtcaactgcgaatattctaagcgccagaaagtcatgaaagcggaaa 65910  T
Q  187 atcgcaacnnnnnnnnnncaaatgagcacccatccacggcacgaatcttgtt 238  Q
    ||| || |          ||||||||||||||||||||| ||||||||||||    
T  65911 atcacagc-tttttttttcaaatgagcacccatccacgggacgaatcttgtt 65961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 87 - 182
Target Start/End: Complemental strand, 2657 - 2562
Alignment:
Q  87 ggacatcatcaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcgccagaaagtcaagaaagcg 182  Q
    ||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2657 ggacatcgtaaggaccttctccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatatcttaagcgccagaaagtcaagaaagcg 2562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 87 - 182
Target Start/End: Complemental strand, 17193 - 17098
Alignment:
Q  87 ggacatcatcaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcgccagaaagtcaagaaagcg 182  Q
    ||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  17193 ggacatcgtaaggaccttctccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatatcttaagcgccagaaagtcaagaaagcg 17098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 87 - 182
Target Start/End: Complemental strand, 40674 - 40579
Alignment:
Q  87 ggacatcatcaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcgccagaaagtcaagaaagcg 182  Q
    ||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40674 ggacatcgtaaggaccttctccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatatcttaagcgccagaaagtcaagaaagcg 40579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 87 - 182
Target Start/End: Original strand, 42522 - 42617
Alignment:
Q  87 ggacatcatcaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcgccagaaagtcaagaaagcg 182  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  42522 ggacatcataaggaccttctccgagaaattttggcaattttgcacgtgggaatcgttaactgcgaatatcttaagcgccagaaagtcaagaaagcg 42617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 87 - 182
Target Start/End: Original strand, 54561 - 54656
Alignment:
Q  87 ggacatcatcaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcgccagaaagtcaagaaagcg 182  Q
    ||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  54561 ggacatcgtaaggaccttctccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatatcttaagcgccagaaagtcaagaaagcg 54656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 244 - 323
Target Start/End: Original strand, 42897 - 42976
Alignment:
Q  244 tgaattctccgcgcgcctcgatttattttgatttttcgaccaaagagtgcaaaatcgcaagtacgtaggtggacgtttga 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42897 tgaattctccgcgcgcctcgatttattttgatttttcgaccaaagagtgcaaaatcgcaagaacgtaggtggacgtttga 42976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 248 - 323
Target Start/End: Original strand, 8518 - 8593
Alignment:
Q  248 ttctccgcgcgcctcgatttattttgatttttcgaccaaagagtgcaaaatcgcaagtacgtaggtggacgtttga 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8518 ttctccgcgcgcctcgatttattttgatttttcgaccaaagagtgcaaaatcgcaagaacgtaggtggacgtttga 8593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 248 - 323
Target Start/End: Original strand, 20533 - 20608
Alignment:
Q  248 ttctccgcgcgcctcgatttattttgatttttcgaccaaagagtgcaaaatcgcaagtacgtaggtggacgtttga 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  20533 ttctccgcgcgcctcgatttattttgatttttcgaccaaagagtgcaaaatcgcaagaacgtaggtggacgtttga 20608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #13
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 248 - 323
Target Start/End: Complemental strand, 40295 - 40220
Alignment:
Q  248 ttctccgcgcgcctcgatttattttgatttttcgaccaaagagtgcaaaatcgcaagtacgtaggtggacgtttga 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  40295 ttctccgcgcgcctcgatttattttgatttttcgaccaaagagtgcaaaatcgcaagaacgtaggtggacgtttga 40220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #14
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 248 - 323
Target Start/End: Original strand, 54940 - 55015
Alignment:
Q  248 ttctccgcgcgcctcgatttattttgatttttcgaccaaagagtgcaaaatcgcaagtacgtaggtggacgtttga 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  54940 ttctccgcgcgcctcgatttattttgatttttcgaccaaagagtgcaaaatcgcaagaacgtaggtggacgtttga 55015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 244 - 323
Target Start/End: Original strand, 73644 - 73723
Alignment:
Q  244 tgaattctccgcgcgcctcgatttattttgatttttcgaccaaagagtgcaaaatcgcaagtacgtaggtggacgtttga 323  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||    
T  73644 tgaattctccgcgcgcctcgatttattttgattttccgacgaaagagtgcaaaatcgcaagaacgtaggtggacgtttga 73723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 237 - 323
Target Start/End: Original strand, 66354 - 66440
Alignment:
Q  237 ttaactatgaattctccgcgcgcctcgatttattttgatttttcgaccaaagagtgcaaaatcgcaagtacgtaggtggacgtttga 323  Q
    |||| ||||||||||| ||||| |||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  66354 ttaaatatgaattctctgcgcggctcgatttatcttaatttttcgaccaaagagtgcaaaatcgcaagaacgtaggtggacgtttga 66440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #17
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 72023 - 72099
Alignment:
Q  87 ggacatcatcaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||||| ||||||| || ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  72023 ggacatcataaggacctccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 72099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #18
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 248 - 294
Target Start/End: Complemental strand, 2278 - 2232
Alignment:
Q  248 ttctccgcgcgcctcgatttattttgatttttcgaccaaagagtgca 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  2278 ttctccgcgcgcctcgatttattttgatttttcgaccaaagagtgca 2232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #19
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 97 - 163
Target Start/End: Complemental strand, 3704 - 3638
Alignment:
Q  97 aggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||| || |||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||    
T  3704 aggacctccagcgagaaattttggcaaatttgcacgcgggattcgttaattgcgaatattttaagcg 3638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #20
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 97 - 163
Target Start/End: Original strand, 30308 - 30374
Alignment:
Q  97 aggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||| || |||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||    
T  30308 aggacctccagcgagaaattttggcaaatttgcacgcgggattcgttaattgcgaatattttaagcg 30374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #21
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 97 - 163
Target Start/End: Complemental strand, 41720 - 41654
Alignment:
Q  97 aggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||| || |||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||    
T  41720 aggacctccagcgagaaattttggcaaatttgcacgcgggattcgttaattgcgaatattttaagcg 41654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #22
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 97 - 163
Target Start/End: Original strand, 53517 - 53583
Alignment:
Q  97 aggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||| || |||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||    
T  53517 aggacctccagcgagaaattttggcaaatttgcacgcgggattcgttaattgcgaatattttaagcg 53583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 97 - 163
Target Start/End: Complemental strand, 18229 - 18163
Alignment:
Q  97 aggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||| || ||||||||||||| || ||||||||||||| ||||||| ||| |||||||||||||    
T  18229 aggacctccagcgagaaattttggaaaatttgcacgcgggattcgttaattgccaatattttaagcg 18163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 61663 - 61587
Alignment:
Q  87 ggacatcatcaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||| | ||||||| || ||||||||||| |||| ||| |||| |||| ||||||| |||||||||||||||||    
T  61663 ggacatcgtaaggacctccagcgagaaattttagcaaattttcacgtgggattcgttaattgcgaatattttaagcg 61587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 282
Target Start/End: Complemental strand, 16814 - 16780
Alignment:
Q  248 ttctccgcgcgcctcgatttattttgatttttcga 282  Q
    |||||||||||||||||||||||||||||||||||    
T  16814 ttctccgcgcgcctcgatttattttgatttttcga 16780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 303
Target Start/End: Original strand, 71914 - 71956
Alignment:
Q  261 tcgatttattttgatttttcgaccaaagagtgcaaaatcgcaa 303  Q
    |||||||||||||||||||||||| ||  ||||||||||||||    
T  71914 tcgatttattttgatttttcgaccgaaacgtgcaaaatcgcaa 71956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 238
Target Start/End: Complemental strand, 2714 - 2681
Alignment:
Q  205 caaatgagcacccatccacggcacgaatcttgtt 238  Q
    ||||||||||||||||||||| ||||||||||||    
T  2714 caaatgagcacccatccacgggacgaatcttgtt 2681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 238
Target Start/End: Complemental strand, 17250 - 17217
Alignment:
Q  205 caaatgagcacccatccacggcacgaatcttgtt 238  Q
    ||||||||||||||||||||| ||||||||||||    
T  17250 caaatgagcacccatccacgggacgaatcttgtt 17217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 238
Target Start/End: Complemental strand, 40731 - 40698
Alignment:
Q  205 caaatgagcacccatccacggcacgaatcttgtt 238  Q
    ||||||||||||||||||||| ||||||||||||    
T  40731 caaatgagcacccatccacgggacgaatcttgtt 40698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 238
Target Start/End: Original strand, 54504 - 54537
Alignment:
Q  205 caaatgagcacccatccacggcacgaatcttgtt 238  Q
    ||||||||||||||||||||| ||||||||||||    
T  54504 caaatgagcacccatccacgggacgaatcttgtt 54537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 3752 - 3720
Alignment:
Q  205 caaatgagcacccatccacggcacgaatcttgt 237  Q
    ||||||||||||||||||||| |||||||||||    
T  3752 caaatgagcacccatccacgggacgaatcttgt 3720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 18277 - 18245
Alignment:
Q  205 caaatgagcacccatccacggcacgaatcttgt 237  Q
    ||||||||||||||||||||| |||||||||||    
T  18277 caaatgagcacccatccacgggacgaatcttgt 18245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 30260 - 30292
Alignment:
Q  205 caaatgagcacccatccacggcacgaatcttgt 237  Q
    ||||||||||||||||||||| |||||||||||    
T  30260 caaatgagcacccatccacgggacgaatcttgt 30292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 41768 - 41736
Alignment:
Q  205 caaatgagcacccatccacggcacgaatcttgt 237  Q
    ||||||||||||||||||||| |||||||||||    
T  41768 caaatgagcacccatccacgggacgaatcttgt 41736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 53469 - 53501
Alignment:
Q  205 caaatgagcacccatccacggcacgaatcttgt 237  Q
    ||||||||||||||||||||| |||||||||||    
T  53469 caaatgagcacccatccacgggacgaatcttgt 53501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 61720 - 61688
Alignment:
Q  205 caaatgagcacccatccacggcacgaatcttgt 237  Q
    ||||||||||||||||||||| |||||||||||    
T  61720 caaatgagcacccatccacgggacgaatcttgt 61688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 99; Significance: 8e-49; HSPs: 13)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 87 - 193
Target Start/End: Original strand, 51404 - 51510
Alignment:
Q  87 ggacatcatcaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcgccagaaagtcaagaaagcgcaaa 186  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51404 ggacatcataaggaccttcactgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcgccagaaagtcaagaaagcgcaaa 51503  T
Q  187 atcgcaa 193  Q
    |||||||    
T  51504 atcgcaa 51510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 88 - 194
Target Start/End: Original strand, 40899 - 41005
Alignment:
Q  88 gacatcatcaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcgccagaaagtcaagaaagcgcaaaa 187  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40899 gacatcataaggaccttcaccgagaaattttggcaagtttgcacgcgggaatcgttaactgcgaatattttaaacgccagaaagtcaagaaagcgcaaaa 40998  T
Q  188 tcgcaac 194  Q
    |||||||    
T  40999 tcgcaac 41005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 87 - 238
Target Start/End: Original strand, 40724 - 40874
Alignment:
Q  87 ggacatcatcaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcgccagaaagtcaagaaagcgcaaa 186  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  40724 ggacatcataaggaccttcaccgagaaattttggcgattttgcacgagagaatcgttaactgcgaatattttaagtgccagaaagtcaagaaagcgcaaa 40823  T
Q  187 atcgcaacnnnnnnnnnncaaatgagcacccatccacggcacgaatcttgtt 238  Q
    ||||||||          ||||||||||||||||||||| ||||||||||||    
T  40824 atcgcaac-tttttttttcaaatgagcacccatccacgggacgaatcttgtt 40874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 87 - 182
Target Start/End: Original strand, 51576 - 51671
Alignment:
Q  87 ggacatcatcaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcgccagaaagtcaagaaagcg 182  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  51576 ggacatcataaggaccttcaccgagaaattttggcaattttgcatgcgggaatcgttaactgcgaatattttaagcgccagaaagtcatgaaagcg 51671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 86 - 169
Target Start/End: Original strand, 41063 - 41146
Alignment:
Q  86 tggacatcatcaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcgccagaa 169  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41063 tggacatcataaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcgccagaa 41146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 86 - 162
Target Start/End: Original strand, 39258 - 39334
Alignment:
Q  86 tggacatcatcaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagc 162  Q
    |||||||||  ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39258 tggacatcaagaggacctccagcgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagc 39334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 113 - 162
Target Start/End: Original strand, 34511 - 34560
Alignment:
Q  113 aattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagc 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34511 aattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagc 34560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 97 - 163
Target Start/End: Original strand, 49189 - 49255
Alignment:
Q  97 aggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||| || |||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||    
T  49189 aggacctccagcgagaaattttggcaaatttgcacgcgggattcgttaattgcgaatattttaagcg 49255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 50287 - 50341
Alignment:
Q  109 gagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    |||| |||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  50287 gagagattttggcaattatgcacgcggaaatcgttaactgcgaatattttaagcg 50341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 163
Target Start/End: Original strand, 95798 - 95872
Alignment:
Q  89 acatcatcaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||| ||||||| || ||||||||||| |||| ||||||||||||| ||||||  |||||||||||||||||    
T  95798 acatcataaggacctccagcgagaaattttagcaaatttgcacgcgggattcgttacttgcgaatattttaagcg 95872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 238
Target Start/End: Original strand, 40667 - 40700
Alignment:
Q  205 caaatgagcacccatccacggcacgaatcttgtt 238  Q
    ||||||||||||||||||||| ||||||||||||    
T  40667 caaatgagcacccatccacgggacgaatcttgtt 40700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 49141 - 49173
Alignment:
Q  205 caaatgagcacccatccacggcacgaatcttgt 237  Q
    ||||||||||||||||||||| |||||||||||    
T  49141 caaatgagcacccatccacgggacgaatcttgt 49173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 95739 - 95771
Alignment:
Q  205 caaatgagcacccatccacggcacgaatcttgt 237  Q
    ||||||||||||||||||||| |||||||||||    
T  95739 caaatgagcacccatccacgggacgaatcttgt 95771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1084 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold1084
Description:

Target: scaffold1084; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 87 - 172
Target Start/End: Complemental strand, 2955 - 2870
Alignment:
Q  87 ggacatcatcaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcgccagaaagt 172  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||| |||||| ||||| |||||||||||||||||||||||    
T  2955 ggacatcataaggaccttcaccgagaaattttggcaattttgcaggcggaaatcgtcaactgtgaatattttaagcgccagaaagt 2870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 64; Significance: 6e-28; HSPs: 3)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 87 - 182
Target Start/End: Complemental strand, 10715 - 10620
Alignment:
Q  87 ggacatcatcaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcgccagaaagtcaagaaagcg 182  Q
    ||||||||| ||||||| |||||||||||||||||  |||||| ||||||| ||||||| |||||||||||||||||||| |||||||||||||||    
T  10715 ggacatcataaggacctccaccgagaaattttggcgtttttgctcgcgggattcgttaagtgcgaatattttaagcgccaaaaagtcaagaaagcg 10620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 11760 - 11684
Alignment:
Q  87 ggacatcatcaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||||| ||||||| ||||||||||||||||| | |||||||| |||| ||||| | |||||||||||||||||    
T  11760 ggacatcataaggacctccaccgagaaattttggcgaatttgcacgtgggattcgtttattgcgaatattttaagcg 11684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 275 - 319
Target Start/End: Complemental strand, 10551 - 10507
Alignment:
Q  275 tttttcgaccaaagagtgcaaaatcgcaagtacgtaggtggacgt 319  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  10551 tttttcgaccaaagagtgcaaaatcgcaagaacgtaggtggacgt 10507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 64; Significance: 6e-28; HSPs: 9)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 87 - 182
Target Start/End: Complemental strand, 28335 - 28240
Alignment:
Q  87 ggacatcatcaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcgccagaaagtcaagaaagcg 182  Q
    ||||||||| ||||||| |||||||||||||||||  |||||| ||||||| ||||||| |||||||||||||||||||| |||||||||||||||    
T  28335 ggacatcataaggacctccaccgagaaattttggcgtttttgctcgcgggattcgttaagtgcgaatattttaagcgccaaaaagtcaagaaagcg 28240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 87 - 182
Target Start/End: Complemental strand, 37111 - 37016
Alignment:
Q  87 ggacatcatcaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcgccagaaagtcaagaaagcg 182  Q
    ||||||||| ||||||| |||||||||||||||||  |||||| ||||||| ||||||| |||||||||||||||||||| |||||||||||||||    
T  37111 ggacatcataaggacctccaccgagaaattttggcgtttttgctcgcgggattcgttaagtgcgaatattttaagcgccaaaaagtcaagaaagcg 37016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 87 - 182
Target Start/End: Complemental strand, 18283 - 18188
Alignment:
Q  87 ggacatcatcaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcgccagaaagtcaagaaagcg 182  Q
    ||||||||| ||||||| |||||||||||||||||  |||||| | ||||| ||||||| |||||||||||||||||||| ||||| |||||||||    
T  18283 ggacatcataaggacctccaccgagaaattttggcgtttttgctcacgggattcgttaagtgcgaatattttaagcgccaaaaagtaaagaaagcg 18188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 19330 - 19254
Alignment:
Q  87 ggacatcatcaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||||| ||||||| ||||||||||||||||| | |||||||| |||| ||||| | |||||||||||||||||    
T  19330 ggacatcataaggacctccaccgagaaattttggcgaatttgcacgtgggattcgtttattgcgaatattttaagcg 19254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 33382 - 33458
Alignment:
Q  87 ggacatcatcaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||||| ||||||| ||||||||||||||||| | |||||||| |||| ||||| | |||||||||||||||||    
T  33382 ggacatcataaggacctccaccgagaaattttggcgaatttgcacgtgggattcgtttattgcgaatattttaagcg 33458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 38156 - 38080
Alignment:
Q  87 ggacatcatcaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||||| ||||||| ||||||||||||||||| | |||||||| |||| ||||| | |||||||||||||||||    
T  38156 ggacatcataaggacctccaccgagaaattttggcgaatttgcacgtgggattcgtttattgcgaatattttaagcg 38080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 275 - 319
Target Start/End: Complemental strand, 18118 - 18074
Alignment:
Q  275 tttttcgaccaaagagtgcaaaatcgcaagtacgtaggtggacgt 319  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  18118 tttttcgaccaaagagtgcaaaatcgcaagaacgtaggtggacgt 18074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 275 - 319
Target Start/End: Complemental strand, 28171 - 28127
Alignment:
Q  275 tttttcgaccaaagagtgcaaaatcgcaagtacgtaggtggacgt 319  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  28171 tttttcgaccaaagagtgcaaaatcgcaagaacgtaggtggacgt 28127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 275 - 319
Target Start/End: Complemental strand, 36947 - 36903
Alignment:
Q  275 tttttcgaccaaagagtgcaaaatcgcaagtacgtaggtggacgt 319  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  36947 tttttcgaccaaagagtgcaaaatcgcaagaacgtaggtggacgt 36903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 163
Target Start/End: Original strand, 21098509 - 21098584
Alignment:
Q  88 gacatcatcaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    |||||||| ||||||| |||||||||||||||||||||||||| | | || || |||| | |||||||||||||||    
T  21098509 gacatcataaggacctccaccgagaaattttggcaattttgcatgagagattcattaattacgaatattttaagcg 21098584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 303
Target Start/End: Original strand, 18966696 - 18966739
Alignment:
Q  260 ctcgatttattttgatttttcgaccaaagagtgcaaaatcgcaa 303  Q
    ||||||||||||||||||||||||| ||  ||||||||||||||    
T  18966696 ctcgatttattttgatttttcgaccgaaccgtgcaaaatcgcaa 18966739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 303
Target Start/End: Original strand, 28992023 - 28992068
Alignment:
Q  258 gcctcgatttattttgatttttcgaccaaagagtgcaaaatcgcaa 303  Q
    ||||||||||||||||||||||||||| || |||| ||||||||||    
T  28992023 gcctcgatttattttgatttttcgaccgaaaagtgtaaaatcgcaa 28992068  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 303
Target Start/End: Complemental strand, 24536378 - 24536338
Alignment:
Q  263 gatttattttgatttttcgaccaaagagtgcaaaatcgcaa 303  Q
    |||||||||||||||||||||||||  ||||||||||||||    
T  24536378 gatttattttgatttttcgaccaaaccgtgcaaaatcgcaa 24536338  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 303
Target Start/End: Complemental strand, 24536801 - 24536761
Alignment:
Q  263 gatttattttgatttttcgaccaaagagtgcaaaatcgcaa 303  Q
    |||||||||||||||||||||||||  ||||||||||||||    
T  24536801 gatttattttgatttttcgaccaaaccgtgcaaaatcgcaa 24536761  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 298
Target Start/End: Complemental strand, 26267956 - 26267918
Alignment:
Q  260 ctcgatttattttgatttttcgaccaaagagtgcaaaat 298  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  26267956 ctcgatttattttgatttttcgaccaaaccgtgcaaaat 26267918  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 287
Target Start/End: Original strand, 47356668 - 47356697
Alignment:
Q  258 gcctcgatttattttgatttttcgaccaaa 287  Q
    ||||||||||||||||||||||||||||||    
T  47356668 gcctcgatttattttgatttttcgaccaaa 47356697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 9477454 - 9477530
Alignment:
Q  87 ggacatcatcaggaccttcaccgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcg 163  Q
    ||||||||| |||| || || ||||||| ||||||| ||||||||| ||||   ||||| | |||||||||||||||    
T  9477454 ggacatcataaggatctccatcgagaaactttggcatttttgcacgagggatgagttaattacgaatattttaagcg 9477530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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