View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0758_low_24 (Length: 329)
Name: NF0758_low_24
Description: NF0758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0758_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 12 - 301
Target Start/End: Complemental strand, 6153736 - 6153447
Alignment:
| Q |
12 |
caatataatcttcctaataaacataaaataataggggttatgagatttgaatatgcgcatgtattaggattttaatatgttgattaaactcaataaatga |
111 |
Q |
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| T |
6153736 |
caatataatcttcctaataaacataaaataataggggttatgagatttgaatatgcgcatgtattaggattttaatatgttgattaaactcaataaatga |
6153637 |
T |
|
| Q |
112 |
atgaaacatgtagttgacttcacctgacatatggtgcaagtttgattcattgtgcttgtttcctcaatattaggctggtaagtttctttctggatagact |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
6153636 |
atgaaacatgtagttgacttcacctgacatatggtgcaagtttgattcattgtgcttgtttccttaatgttaggctggtaagtttctttctggatagact |
6153537 |
T |
|
| Q |
212 |
ctgagatttcctcctctctcagccccgccttcattacctgtccgttaatttaatttataattttcaattgaatatgatcttgtatcatat |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6153536 |
ctgagatttcctcctctctcagccccgccttcattacctgtccgttaattttatttataattttcaattgaatatgatcttgtatcatat |
6153447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 129 - 302
Target Start/End: Original strand, 33801062 - 33801235
Alignment:
| Q |
129 |
cttcacctgacatatggtgcaagtttgattcattgtgcttgtttcctcaatattaggctggtaagtttctttctggatagactctgag-atttcctcctc |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| || |||| ||||||||||| |
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| T |
33801062 |
cttcacctgacatatggtgcaagtttgattcattgtgcttgtttcctcagtattaggctggtaagtttcttgctggatatac-atgagaatttcctcctc |
33801160 |
T |
|
| Q |
228 |
tctcagccccgccttcatt-acctgtccgttaatttaatttataattttcaattgaatatgatcttgtatcatatg |
302 |
Q |
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| T |
33801161 |
ttccagccccacc-tcattcatctgtacgttaattaaatttatcattttcaattgaatatgatcatgtataatatg |
33801235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 105 - 301
Target Start/End: Complemental strand, 6147129 - 6146933
Alignment:
| Q |
105 |
taaatgaatgaaacatgtagttgacttcacctgacatatggtgcaagtttgattcattgtgcttgtttcctcaatattaggctggtaagtttctttctgg |
204 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||| || ||| |
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| T |
6147129 |
taaatgaatgaaacatgtagttgacctcacctgacatatggtgcatatttgattcattgtgcttgtttcctcaatattaggccggtatgttttttgctgt |
6147030 |
T |
|
| Q |
205 |
atagactctgagatttcctcctctctcagccccgccttcattacctgtccgttaatttaatttataattttcaattgaatatgatcttgtatcatat |
301 |
Q |
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|| || |||||||||||||||||| || | ||| |||||| |||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
6147029 |
atgtacaagaagatttcctcctctctcaccctccaaaccatcacctgtatattaatttaatttatcattttctattgaatatgatcttgtatcatat |
6146933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 129 - 296
Target Start/End: Original strand, 33729946 - 33730113
Alignment:
| Q |
129 |
cttcacctgacatatggtgcaagtttgattcattgtgcttgtttcctcaatattaggctggtaagtttctttctggatagactctgag-atttcctcctc |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| || |||| ||||||||||| |
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| T |
33729946 |
cttcacctgacatatggtgcaagtttgattcattgtgcttgtttcctcagtattaggctggtaagtttcttgctggatgtac-atgagaatttcctcctc |
33730044 |
T |
|
| Q |
228 |
tctcagccccgccttcatt-acctgtccgttaatttaatttataattttcaattgaatatgatcttgtat |
296 |
Q |
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| ||||||| || ||||| | |||| |||||||| ||||||| |||||||||||||||||||| ||||| |
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|
| T |
33730045 |
ttccagccccacc-tcattcatctgtacgttaattaaatttatcattttcaattgaatatgatcatgtat |
33730113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 106 - 182
Target Start/End: Complemental strand, 6127943 - 6127867
Alignment:
| Q |
106 |
aaatgaatgaaacatgtagttgacttcacctgacatatggtgcaagtttgattcattgtgcttgtttcctcaatatt |
182 |
Q |
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|
|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
6127943 |
aaatgaatgaaacatgtagttgacctcacctgacatatggtgcatgtttgattcattgtgcttgtttcctcagtatt |
6127867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 6128304 - 6128226
Alignment:
| Q |
12 |
caatataatcttcctaataaacataaaataatag-gggttatgagatttgaatatgcgcatgtattaggattttaatat |
89 |
Q |
| |
|
||||||||||||||||||||||| |||| ||| | ||||||||| | |||||||||| ||||||||||||||||||||| |
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| T |
6128304 |
caatataatcttcctaataaacaaaaaaaaattgagggttatgatacttgaatatgctcatgtattaggattttaatat |
6128226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 33729464 - 33729538
Alignment:
| Q |
12 |
caatataatcttcctaataaacataaaataataggggttatgagatttgaatatgcgcatgtattaggattttaa |
86 |
Q |
| |
|
||||| |||||||||||||||||||||| || ||||||||||| | |||||||||| || ||||||||||||||| |
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| T |
33729464 |
caataaaatcttcctaataaacataaaacaagaggggttatgacacttgaatatgctcaagtattaggattttaa |
33729538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 33800581 - 33800655
Alignment:
| Q |
12 |
caatataatcttcctaataaacataaaataataggggttatgagatttgaatatgcgcatgtattaggattttaa |
86 |
Q |
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||||| |||||||||||||||||||||| || ||||||||||| | |||||||||| || ||||||||||||||| |
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| T |
33800581 |
caataaaatcttcctaataaacataaaacaagaggggttatgacacttgaatatgctcaagtattaggattttaa |
33800655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 6147499 - 6147422
Alignment:
| Q |
12 |
caatataatcttcctaataaacataaaataataggggttatgagatttgaatatgcgcatgtattaggattttaatat |
89 |
Q |
| |
|
||||||||||||||||||||||| |||| | | ||||||||| | |||||||||| ||||||||||||||||||||| |
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| T |
6147499 |
caatataatcttcctaataaacaaaaaaaattgagggttatgatacttgaatatgctcatgtattaggattttaatat |
6147422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 6140440 - 6140369
Alignment:
| Q |
107 |
aatgaatgaaacatgtagttgacttcacctgacatatggtgcaagtttgattcattgtgcttgtttcctcaa |
178 |
Q |
| |
|
||||||||||||||||||||| | ||||||| |||||||| || ||||||||| || ||||||||||||| |
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|
| T |
6140440 |
aatgaatgaaacatgtagttggcctcacctggcatatggtacatgtttgattctgagtacttgtttcctcaa |
6140369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 301
Target Start/End: Complemental strand, 6127809 - 6127763
Alignment:
| Q |
255 |
gttaatttaatttataattttcaattgaatatgatcttgtatcatat |
301 |
Q |
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||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
6127809 |
gttaatttaatttatcattttacattgaatatgatcttgtatcatat |
6127763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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