View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0758_low_25 (Length: 326)
Name: NF0758_low_25
Description: NF0758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0758_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 10 - 297
Target Start/End: Original strand, 11764230 - 11764517
Alignment:
| Q |
10 |
aagaatatgttaatggaatcaattttgcatcagcaggagctggggctttagttgaaacacatgaaggactggtctgttttatgttgctaatttaatcatg |
109 |
Q |
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| T |
11764230 |
aagaatatgttaatggaatcaattttgcatcagcaggagctggggctttagttgaaacacatgaaggactggtctgctttatgttgctaatttaatcatg |
11764329 |
T |
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| Q |
110 |
ttgcaattgttaatttctggttgaattgcaatttttcgtcgtagtttaaatctaacattgaggtgcaagtatctgaaaaaatatataattcaatgattta |
209 |
Q |
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| T |
11764330 |
ttgcaattgttaattcctggttgaattgcaatttttcgtcgtagtttaaatctaacattgaggtgcaagtatctgaaaaaatatataattcaatgattta |
11764429 |
T |
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| Q |
210 |
tagtagatgatatgaaattttgatattttcaggtgaaagatctaaagactcaattgacttatttcaagaatgttaagcaagaattgag |
297 |
Q |
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| T |
11764430 |
tagtagatgatatgaaattttgatattttcaggtgaaagatctaaagactcaattgacttatttcaagaatgttaagcaagaattgag |
11764517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 11783680 - 11783777
Alignment:
| Q |
14 |
atatgttaatggaatcaattttgcatcagcaggagctggggctttagttgaaacacatgaaggactggtctgttttatgttgctaatttaatcatgtt |
111 |
Q |
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| T |
11783680 |
atatattaatggagttaattttgcatcagcaggagctggtgctttagtagaaacacatcaaggactggtctgttttatgttgttgatttaatcatgtt |
11783777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 11778311 - 11778405
Alignment:
| Q |
10 |
aagaatatgttaatggaatcaattttgcatcagcaggagctggggctttagttgaaacacatgaaggactggtctgttttatgttgctaatttaa |
104 |
Q |
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| T |
11778311 |
aagaatatattaatggaatcaattttgcatcagcagcagctggggctttagtagaaaccaatcaaggacgggtcagtttaatgttgttaatttaa |
11778405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 11770396 - 11770498
Alignment:
| Q |
19 |
ttaatggaatcaattttgcatcagcaggagctggggctttagttgaaacacatgaaggactggtctgttttatgttgctaatttaatcatgttgcaattg |
118 |
Q |
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| T |
11770396 |
ttaatggaatcaattttgcatctgctggagctggggctttagtagaaacctatcaaggaatggtatgttttat-ttgttaatttaatgatgttgcaatcg |
11770494 |
T |
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| Q |
119 |
ttaa |
122 |
Q |
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|||| |
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| T |
11770495 |
ttaa |
11770498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 231 - 297
Target Start/End: Original strand, 11784279 - 11784345
Alignment:
| Q |
231 |
gatattttcaggtgaaagatctaaagactcaattgacttatttcaagaatgttaagcaagaattgag |
297 |
Q |
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| T |
11784279 |
gatatttccaggtgacagatctaaagacacaattgacttatttgaagaatgtcaagaaagtattgag |
11784345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 282
Target Start/End: Original strand, 11770640 - 11770690
Alignment:
| Q |
232 |
atattttcaggtgaaagatctaaagactcaattgacttatttcaagaatgt |
282 |
Q |
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| T |
11770640 |
atatttccaggtgatagatctagagacacaattgacttatttcaagaatgt |
11770690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 297
Target Start/End: Original strand, 11778870 - 11778928
Alignment:
| Q |
239 |
caggtgaaagatctaaagactcaattgacttatttcaagaatgttaagcaagaattgag |
297 |
Q |
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| T |
11778870 |
caggtgatagatctaaagacacaattgaattatttcaagaatgtcaagaaagtattgag |
11778928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 282
Target Start/End: Original strand, 6539821 - 6539888
Alignment:
| Q |
215 |
gatgatatgaaattttgatattttcaggtgaaagatctaaagactcaattgacttatttcaagaatgt |
282 |
Q |
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| T |
6539821 |
gatgatgtgatattttgatatttccgggtgatagatttaaagactcaattgttttattttaagaatgt |
6539888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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