View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0758_low_26 (Length: 326)
Name: NF0758_low_26
Description: NF0758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0758_low_26 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 28529659 - 28529345
Alignment:
| Q |
1 |
attctccagtcgatagcaatacaattaaagtcctgcacacaatgaatgggaaatggtgagtaaattt--acaacnnnnnnnngtagcaggagagtactgg |
98 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
28529659 |
attctccagtcaatagcaatacaattaaagtcctgcacacaatgaatgggaaatggtgagtaaattataacaacaaaagaaagtagcaggagagtactgg |
28529560 |
T |
|
| Q |
99 |
cattttcatattgaaatatttttcgattaaataagaggaaaagaatcataccttctgcacatatattaagaataaaaataatggatccacaaaaattgcc |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28529559 |
cattttcatattgaaatatttttcgattaaataaaaggaaaagaatcataccttctgcacatatattaagaataaaaataatggatccacaaaaattgcc |
28529460 |
T |
|
| Q |
199 |
agcatgcaaaaaatggccagaaatttgttccattgttgaacaagtttagtgtgagggtttataactccaggaacacatgaagagcagaaagagaaaaaat |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28529459 |
agcatgcaaaaaatggccagaaatttgttccattgttgaacaagtttagtgtgagggtttataactccaggaacacatgaagagcagaaagagaaaaaat |
28529360 |
T |
|
| Q |
299 |
ctctcccaaaaccct |
313 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
28529359 |
ctctcccaaaaccct |
28529345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 136 - 296
Target Start/End: Complemental strand, 28086916 - 28086756
Alignment:
| Q |
136 |
gaaaagaatcataccttctgcacatatattaagaataaaaataatggatccacaaaaattgccagcatgcaaaaaatggccagaaatttgttccattgtt |
235 |
Q |
| |
|
|||||||||||||||| || |||||| | |||||| |||||||| ||||| ||||||||||| | || |||||| ||||||| || ||||||||||||| |
|
|
| T |
28086916 |
gaaaagaatcatacctcctccacatagagtaagaaaaaaaataacggatcaacaaaaattgcgaccaagcaaaatatggccaaaaccttgttccattgtt |
28086817 |
T |
|
| Q |
236 |
gaacaagtttagtgtgagggtttataactccaggaacacatgaagagcagaaagagaaaaa |
296 |
Q |
| |
|
| |||| ||| | |||||||| ||||||||||||| ||||||| ||||||||| ||||| |
|
|
| T |
28086816 |
gtacaacttttgcatgagggttcataactccaggaatacatgaattgcagaaagaaaaaaa |
28086756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 125 - 295
Target Start/End: Complemental strand, 28056287 - 28056117
Alignment:
| Q |
125 |
ttaaataagaggaaaagaatcataccttctgcacatatattaagaataaaaataatggatccacaaaaattgccagcatgcaaaaaatggccagaaattt |
224 |
Q |
| |
|
|||||||| | ||||||||| | ||||| | |||||| | | |||| |||||||| ||||| |||||||||| | ||||||||| ||||||| || || |
|
|
| T |
28056287 |
ttaaataaaatgaaaagaattaaaccttgttcacatagagtgagaagaaaaataacggatcaacaaaaattgtgaccatgcaaaatatggccaaaacctt |
28056188 |
T |
|
| Q |
225 |
gttccattgttgaacaagtttagtgtgagggtttataactccaggaacacatgaagagcagaaagagaaaa |
295 |
Q |
| |
|
|||||||||| | || | ||| ||||||||||| ||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
28056187 |
gttccattgtagtacgactttcgtgtgagggttcataactccaggaatacatgaagagcagaaagaaaaaa |
28056117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 124 - 290
Target Start/End: Complemental strand, 27906915 - 27906749
Alignment:
| Q |
124 |
attaaataagaggaaaagaatcataccttctgcacatatattaagaataaaaataatggatccacaaaaattgccagcatgcaaaaaatggccagaaatt |
223 |
Q |
| |
|
||||||||| |||||||||||||||| || | |||||| | |||||| |||||||| ||||| |||| |||||| | || |||||| ||| ||| || | |
|
|
| T |
27906915 |
attaaataaaaggaaaagaatcatactttgttcacatagaataagaacaaaaataaaggatcaacaagaattgcgaccaagcaaaatatgtccaacaact |
27906816 |
T |
|
| Q |
224 |
tgttccattgttgaacaagtttagtgtgagggtttataactccaggaacacatgaagagcagaaaga |
290 |
Q |
| |
|
||||||||||||| | || | | | ||| ||||| |||||||| |||| |||||||||||||||||| |
|
|
| T |
27906815 |
tgttccattgttgtataattctcgcgtgtgggttcataactcctggaatacatgaagagcagaaaga |
27906749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 124 - 295
Target Start/End: Original strand, 27926906 - 27927078
Alignment:
| Q |
124 |
attaaataagaggaaaagaatcataccttctgcacatatattaagaataaaaataatggatccacaaaaattgccagcatgcaaaaaatggccagaaatt |
223 |
Q |
| |
|
||||||||| | ||||||||| ||||||| | |||||| | |||||| |||||||||||||| | ||||||||| | || |||||| ||||||| || | |
|
|
| T |
27926906 |
attaaataaaatgaaaagaattataccttgttcacatagagtaagaagaaaaataatggatcaataaaaattgcgaccaagcaaaatatggccaaaacct |
27927005 |
T |
|
| Q |
224 |
tgttccattgttgaacaagtttagtgtgagggtt-tataactccaggaacacatgaagagcagaaagagaaaa |
295 |
Q |
| |
|
||||||||||||| |||| ||| | ||||| || |||||| |||||| ||||||||||||||||| |||| |
|
|
| T |
27927006 |
tgttccattgttgtacaactttcgcttgaggattccataacttcaggaatccatgaagagcagaaagaaaaaa |
27927078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 126 - 295
Target Start/End: Complemental strand, 28012254 - 28012085
Alignment:
| Q |
126 |
taaataagaggaaaagaatcataccttctgcacatatattaagaataaaaataatggatccacaaaaattgccagcatgcaaaaaatggccagaaatttg |
225 |
Q |
| |
|
||||||| |||||||||| |||||||| | |||||| | | ||||||||||||| ||||||||||||||||| | | ||||| ||||||| ||| ||| |
|
|
| T |
28012254 |
taaataaaaggaaaagaagcataccttgttcacatagaatgagaataaaaataagggatccacaaaaattgcaacaaagcaaattatggccaaaaacttg |
28012155 |
T |
|
| Q |
226 |
ttccattgttgaacaagtttagtgtgagggtttataactccaggaacacatgaagagcagaaagagaaaa |
295 |
Q |
| |
|
|||||| || |||| |||| || ||||| |||||| ||||| ||||||||||||| |||| |||| |
|
|
| T |
28012154 |
ttccataagtgtacaactttacagtcggggttcataactttaggaatacatgaagagcaggaagaaaaaa |
28012085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 146 - 295
Target Start/End: Complemental strand, 28026488 - 28026339
Alignment:
| Q |
146 |
ataccttctgcacatatattaagaataaaaataatggatccacaaaaattgccagcatgcaaaaaatggccagaaatttgttccattgttgaacaagttt |
245 |
Q |
| |
|
||||||| | |||||| | |||||| |||||||| ||||| ||| ||||||| | |||||||| ||||||| ||| |||||||||||||| |||| ||| |
|
|
| T |
28026488 |
ataccttgttcacatagaataagaagaaaaataacggatcaacataaattgcgactatgcaaaatatggccaaaaacttgttccattgttgtacaacttt |
28026389 |
T |
|
| Q |
246 |
agtgtgagggtttataactccaggaacacatgaagagcagaaagagaaaa |
295 |
Q |
| |
|
| || ||||| ||||| ||||||| ||| ||||| |||||||| |||| |
|
|
| T |
28026388 |
cgcatgggggttcataacaccaggaatacacgaagaacagaaagaaaaaa |
28026339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 166 - 265
Target Start/End: Complemental strand, 27893043 - 27892944
Alignment:
| Q |
166 |
aagaataaaaataatggatccacaaaaattgccagcatgcaaaaaatggccagaaatttgttccattgttgaacaagtttagtgtgagggtttataactc |
265 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| || |||| |||| || | |||||| |||||||| || ||||||||| | || || |||||||||| |
|
|
| T |
27893043 |
aagaagaaaaataatggatccacaaaaattgccaccaagcaacaaattgcaaaaaatttattccattgatgtacaagtttattatgtggatttataactc |
27892944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 295
Target Start/End: Complemental strand, 27995965 - 27995806
Alignment:
| Q |
136 |
gaaaagaatcataccttctgcacatatattaagaataaaaataatggatccacaaaaattgccagcatgcaaaaaatggccagaaatttgttccattgtt |
235 |
Q |
| |
|
||||||||||||||||| | |||||| |||||| |||||||| ||||| | ||||||||| | |||| | || || | || | |||||||||||| |
|
|
| T |
27995965 |
gaaaagaatcataccttgttcacatagtataagaagaaaaataacggatcaaaaaaaattgcgactgagcaagatatagcaaaaattgtgttccattgtt |
27995866 |
T |
|
| Q |
236 |
gaacaagtttagtgtgagggtttataactccaggaacacatgaagagcagaaagagaaaa |
295 |
Q |
| |
|
| || | |||| ||||||||| ||||||| ||||| |||||||||||| ||||| |||| |
|
|
| T |
27995865 |
gtacgactttacagtgagggttcataactctaggaatacatgaagagcaaaaagataaaa |
27995806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 125 - 290
Target Start/End: Complemental strand, 1435594 - 1435429
Alignment:
| Q |
125 |
ttaaataagaggaaaagaatcataccttctgcacatatattaagaataaaaataatggatccacaaaaattgccagcatgcaaaaaatggccagaaattt |
224 |
Q |
| |
|
|||||||| | ||||||||||| | ||| |||||||| | |||||| |||||||| ||||| ||||||||||| |||| |||||| ||||||| ||| || |
|
|
| T |
1435594 |
ttaaataaaatgaaaagaatcaaaacttgtgcacataaagtaagaagaaaaataagggatcaacaaaaattgcgagcaggcaaaatatggccaaaaactt |
1435495 |
T |
|
| Q |
225 |
gttccattgttgaacaagtttagtgtgagggtttataactccaggaacacatgaagagcagaaaga |
290 |
Q |
| |
|
||||||||| || |||| ||| ||||||||||| || |||||||||| |||||||||||||||||| |
|
|
| T |
1435494 |
gttccattgctgtacaatttttgtgtgagggttcatcactccaggaatacatgaagagcagaaaga |
1435429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2960 times since January 2019
Visitors: 4805