View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0758_low_29 (Length: 321)
Name: NF0758_low_29
Description: NF0758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0758_low_29 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 99 - 321
Target Start/End: Original strand, 33716297 - 33716508
Alignment:
| Q |
99 |
atttggaccgtagtatttaaatataagttgtgcaccttaaactctaagcttagaataatagaaaggaattgcagccactccacagtctcagacgtaggca |
198 |
Q |
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| T |
33716297 |
atttggaccgtagtatttaaatgtaagttgtgcaccttaaactctaagcttagaataatagaaaggaattgcagccactccacagtct-----------a |
33716385 |
T |
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| Q |
199 |
caattgaccgatttccattatcaaacatgtgtgtttattgtttgcatttttcgtatctttattcttttgaactaaggttgatgtcctaacaagctttatg |
298 |
Q |
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| T |
33716386 |
caattgaccgatttccattatcaaacatgtgtgtttattgtttgcatttttcgtatctttattcttttgaactagggttgatgtcctaacaagctttatg |
33716485 |
T |
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| Q |
299 |
tgaaaagctgcaatttttaggta |
321 |
Q |
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| T |
33716486 |
tgaaaagctgcaatttttaggta |
33716508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 178
Target Start/End: Original strand, 32183566 - 32183640
Alignment:
| Q |
104 |
gaccgtagtatttaaatataagttgtgcaccttaaactctaagcttagaataatagaaaggaattgcagccactc |
178 |
Q |
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| T |
32183566 |
gaccgttgtatgtaaatacaagttgtacatcgtaaaccttaagcttaaaataatagaaaagaactgcagccactc |
32183640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 270
Target Start/End: Original strand, 35052204 - 35052247
Alignment:
| Q |
227 |
gtgtgtttattgtttgcatttttcgtatctttattcttttgaac |
270 |
Q |
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| T |
35052204 |
gtgtgttcattgtttgcgtttttcgtatctttattcttttgaac |
35052247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 169
Target Start/End: Complemental strand, 7260222 - 7260160
Alignment:
| Q |
107 |
cgtagtatttaaatataagttgtgcaccttaaactctaagcttagaataatagaaaggaattg |
169 |
Q |
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| T |
7260222 |
cgtagtattaaaatacaagttgcataccgtaaactctaagcttaaaataatagaaaggtattg |
7260160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 17126147 - 17126208
Alignment:
| Q |
228 |
tgtgtttattgtttgcatttttcgtatctttattcttttgaactaaggttgatgtcctaaca |
289 |
Q |
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| T |
17126147 |
tgtgttcattgtttgcgttttttgaatttttactcttttgaactagggttgatgttctaaca |
17126208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 129
Target Start/End: Complemental strand, 4999943 - 4999915
Alignment:
| Q |
101 |
ttggaccgtagtatttaaatataagttgt |
129 |
Q |
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| T |
4999943 |
ttggaccgtagtatttaaatataagttgt |
4999915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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