View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0758_low_38 (Length: 313)
Name: NF0758_low_38
Description: NF0758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0758_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 26606056 - 26605750
Alignment:
| Q |
1 |
aatttttcgacctcctttgtgtgctatgatgaaacgcgtttggtaataaccaacatttttgtttttataatatcttgataattgtttttctgcttcattt |
100 |
Q |
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|||||||||||||| ||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26606056 |
aatttttcgacctcgtttgtttgctctgatgaaacgagtttggtaataaccaacatttttgtttttataatatcttgataattgtttttctgcttcattt |
26605957 |
T |
|
| Q |
101 |
tatatgttcttactaaagtgggtttgtgataaatttatggacaaattaaaggagactagtcggacatactttaacctatgagtgnnnnnnnnnctagaac |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||| |
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| T |
26605956 |
tatatgttcttactaaagtgggtttgtgataaatttatggacaaattaaaggagactagttggacatacttcaacctatgagtg--tttttttctagaac |
26605859 |
T |
|
| Q |
201 |
cctaagcgaacaacgtgatgattataacgtctcaaatcaaattatcaagtctaacatcagaattacacataatccatttgagttagtttggtggtattga |
300 |
Q |
| |
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|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
26605858 |
cctaagcgaacaacatgatgattataatgtctcaaatcaaattatcaagtctaacatcagaattacacataacccatttgagttagcctggtggtattga |
26605759 |
T |
|
| Q |
301 |
gttgggtct |
309 |
Q |
| |
|
||||||||| |
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|
| T |
26605758 |
gttgggtct |
26605750 |
T |
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