View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0758_low_4 (Length: 596)
Name: NF0758_low_4
Description: NF0758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0758_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 69 - 492
Target Start/End: Original strand, 2016989 - 2017413
Alignment:
| Q |
69 |
tcttcttcatttgttactcaaattttcctctggttaacgtttttattttgttgtaggcttgtagcaattacattcggaagattttgcatgcttttcctgg |
168 |
Q |
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| T |
2016989 |
tcttcttcatttgttactcaaattttcctctggttaacgtttttattttgttgtaggcttgtagcaattacattcggaagattttgcatgcttttcctga |
2017088 |
T |
|
| Q |
169 |
aactggaagcttgacatggtattttctccaagtcttcttatgtgtaatgttttaacatgcattccatgtatgaattttattgactaaaatgttgtcttgt |
268 |
Q |
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| T |
2017089 |
aactggaagcttgacatggtattttctccaagtcttcttatatgtaatgttttaacatgtattccatgaatatattttattgattaaaatgttgtcttgt |
2017188 |
T |
|
| Q |
269 |
tacagctcagtacatggtttagaagaaaaatatagnnnnnnnaggatgttttctctctttaggagaagaaactcaaaattttga-tttttaacacatctt |
367 |
Q |
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| T |
2017189 |
tacagatgagtgcatggtttagaagaaaaatatagtttttttaggatgttttctctctttaggagaagaaacacaaaattttgattttttaacacatctt |
2017288 |
T |
|
| Q |
368 |
tttcaataaaagagggaaggcctgatttgacccttcataattttcatgcgaaccaattttttcatgaaaaataaaacccaaaatagtctctgacatttgc |
467 |
Q |
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| T |
2017289 |
tttcaataaaagagggaaggcctgatttgacccttcataattttcctgcgaaccaattttgtcatgagaaataaaacccaaaatagtctctgacatttgc |
2017388 |
T |
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| Q |
468 |
acatggtcacaaatttgtccctcaa |
492 |
Q |
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| T |
2017389 |
acatggtcacaaatttgtccctcaa |
2017413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 489 - 592
Target Start/End: Original strand, 2006021 - 2006122
Alignment:
| Q |
489 |
tcaaaagagtactctgtgttttaagtatttctag--gtgggtctagcaaaaattctacatacatggatgtacactaacttagtttgtttacttattcttg |
586 |
Q |
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| T |
2006021 |
tcaaaagagtaatttgtgttttaagtatctatagatgtgggtctagcaaaaattctacatacatggat----actaacttagtttgttttcttattcttg |
2006116 |
T |
|
| Q |
587 |
tatgtt |
592 |
Q |
| |
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|||||| |
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|
| T |
2006117 |
tatgtt |
2006122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 489 - 592
Target Start/End: Original strand, 2010147 - 2010252
Alignment:
| Q |
489 |
tcaaaagagtactctgtgttttaagtatttctag--gtgggtctagcaaaaattctacatacatggatgtacactaacttagtttgtttacttattcttg |
586 |
Q |
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| T |
2010147 |
tcaaaagagtaatctgtgttttaagtatctatagatgtgggtctagcaaaaattatgcatacaaggatgtacgctaacttaatttgtttcgttattcttg |
2010246 |
T |
|
| Q |
587 |
tatgtt |
592 |
Q |
| |
|
|||||| |
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|
| T |
2010247 |
tatgtt |
2010252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 564 - 596
Target Start/End: Original strand, 2011602 - 2011634
Alignment:
| Q |
564 |
cttagtttgtttacttattcttgtatgttatct |
596 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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|
| T |
2011602 |
cttagtttgtttacttattcttgtatgttatct |
2011634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 236
Target Start/End: Original strand, 2018807 - 2018844
Alignment:
| Q |
199 |
agtcttcttatgtgtaatgttttaacatgcattccatg |
236 |
Q |
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|||||| || |||||||||||||||||||||||||||| |
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| T |
2018807 |
agtcttattctgtgtaatgttttaacatgcattccatg |
2018844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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