View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0758_low_40 (Length: 303)
Name: NF0758_low_40
Description: NF0758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0758_low_40 |
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| [»] scaffold0257 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 2271995 - 2272282
Alignment:
| Q |
1 |
tttctttgatttcgataaactagctaaactcccaaactcagctaaatggtctgttaaattctcaggagaaactgtaggaaaatcgatccacacaaaaatg |
100 |
Q |
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||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2271995 |
tttctttgatttcgataaatcaactaaactcccaaactgagctaaatggtctgttaaattctcaggagaaactgtaggaaaatcgatccacaagaaaatg |
2272094 |
T |
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| Q |
101 |
ccgctccataaggaacctaacaaagaacactgaagaaatagatactctgcaggctcatgttggtggcaacccacaacacaaaattgagcatccggatgaa |
200 |
Q |
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| T |
2272095 |
ccgctccataaggaacctaacaaagaacactgaagaaatagatactctgcagactcatgttggtggcaacccgcaacacaaaattgagcatccggatgaa |
2272194 |
T |
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| Q |
201 |
taatgattcgcctgtataaattatttttggtagttgatctgttccaaagtagtcgccaaacaaatagagacgcctgatgatgtccatc |
288 |
Q |
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| T |
2272195 |
taatgattcgcctgtataaattatttttggtagttgatctgttccaaagtagtcgccaaacaaatagagacgcctgatgatggccatc |
2272282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0257 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 271
Target Start/End: Original strand, 22408 - 22676
Alignment:
| Q |
3 |
tctttgatttcgataaactagctaaactcccaaactcagctaaatggtctgttaaattctcaggagaaactgtaggaaaatcgatccacacaaaaatgcc |
102 |
Q |
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| T |
22408 |
tctttgatttcgatatactagctaaactcccaaactgagctaaatgatttgttgcattctcgggagaaactgtaataaatccaatccacaccaaaacatc |
22507 |
T |
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| Q |
103 |
gctccataaggaacctaacaaagaacactgaagaaatagatactctgcaggctcatgttggtggcaacccacaacacaaaattgagcatccggatgaata |
202 |
Q |
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| T |
22508 |
gctccataagaaatcgaacaaaggacgttgtaaaaaaagatgctttgcagacttttgttggccgcaacccacgacataaaattgagcatcctgatgaaga |
22607 |
T |
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| Q |
203 |
atgattcgcctgtataaattatttttggtagttgatctgttccaaagtagtcgccaaacaaatagagac |
271 |
Q |
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| T |
22608 |
attcctcgcttgcataaattgttctttgtaggcaatctatttcgaagtagtcaccaaacaaacagagac |
22676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 116
Target Start/End: Original strand, 23787446 - 23787557
Alignment:
| Q |
5 |
tttgatttcgataaactagctaaactcccaaactcagctaaatggtctgttaaattctcaggagaaactgtaggaaaatcgatccacacaaaaatgccgc |
104 |
Q |
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||||||||||||| ||||||||||||| |||||| | |||||| |||| |||||| | |||||||||| | |||| || |||||||||||||| ||| |
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| T |
23787446 |
tttgatttcgatatactagctaaactctcaaactgaattaaatgatctgataaattatttggagaaactgaaagaaagtcaatccacacaaaaataccgt |
23787545 |
T |
|
| Q |
105 |
tccataaggaac |
116 |
Q |
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| T |
23787546 |
tccataaggaac |
23787557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 152
Target Start/End: Complemental strand, 12162990 - 12162860
Alignment:
| Q |
22 |
agctaaactcccaaactcagctaaatggtctgttaaattctcaggagaaactgtaggaaaatcgatccacacaaaaatgccgctccataaggaacctaac |
121 |
Q |
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|||||||||| |||| | || || ||| ||||||| |||||| | ||| | |||| |||| ||||||||| |||| |||||||||||||||| ||| |
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| T |
12162990 |
agctaaactctcaaattgagttagatgatctgttacattctccgaagatattgtaagaaatctgatccacaccaaaacatcgctccataaggaaccaaac |
12162891 |
T |
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| Q |
122 |
aaagaacactgaagaaatagatactctgcag |
152 |
Q |
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||| |||||| ||||| |||| |||||||| |
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| T |
12162890 |
aaaagacactgtagaaaaagatgctctgcag |
12162860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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