View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0758_low_41 (Length: 301)

Name: NF0758_low_41
Description: NF0758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0758_low_41
NF0758_low_41
[»] chr4 (4 HSPs)
chr4 (161-282)||(19658078-19658210)
chr4 (21-72)||(19657937-19657988)
chr4 (162-209)||(6409747-6409794)
chr4 (178-206)||(54199633-54199661)
[»] chr3 (4 HSPs)
chr3 (218-277)||(27741428-27741487)
chr3 (21-72)||(14993563-14993614)
chr3 (162-209)||(43275672-43275718)
chr3 (161-205)||(27741510-27741554)
[»] chr6 (2 HSPs)
chr6 (162-282)||(22577505-22577635)
chr6 (21-64)||(22577429-22577472)
[»] scaffold0009 (2 HSPs)
scaffold0009 (162-209)||(54194-54241)
scaffold0009 (213-274)||(54379-54440)
[»] chr5 (1 HSPs)
chr5 (162-209)||(7767372-7767418)


Alignment Details
Target: chr4 (Bit Score: 79; Significance: 6e-37; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 161 - 282
Target Start/End: Original strand, 19658078 - 19658210
Alignment:
Q  161 tcattagcactcccaagcaccttcatccaaaaacacacctcccaaagaaacagcaaa-----------aaccccggtaacatcatacaacaagaaaattg 249  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||           ||||||| ||||||||||||||||||||||||    
T  19658078 tcatttgcactcccaagcaccttcatccaaacacacacctcccaaagaaacagcaaaaaccgcccaaaaaccccgttaacatcatacaacaagaaaattg 19658177  T
Q  250 ctcctcaaaattacactcacaaaacgccctatg 282  Q
    ||||| |||||||||||||||||||||||||||    
T  19658178 ctccttaaaattacactcacaaaacgccctatg 19658210  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 19657937 - 19657988
Alignment:
Q  21 acatcatcacaagcaaccacaaaaacaacttccacaattacattccgctgct 72  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  19657937 acatcatcacaagctgccacaaaaacaacttccacaattacattccgctgct 19657988  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 209
Target Start/End: Original strand, 6409747 - 6409794
Alignment:
Q  162 cattagcactcccaagcaccttcatccaaaaacacacctcccaaagaa 209  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  6409747 cattagctctcccgagcaccttcatccaaaaacacacctcccaaagaa 6409794  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 206
Target Start/End: Original strand, 54199633 - 54199661
Alignment:
Q  178 caccttcatccaaaaacacacctcccaaa 206  Q
    |||||||||||||||||||||||||||||    
T  54199633 caccttcatccaaaaacacacctcccaaa 54199661  T

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Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 218 - 277
Target Start/End: Complemental strand, 27741487 - 27741428
Alignment:
Q  218 aaccccggtaacatcatacaacaagaaaattgctcctcaaaattacactcacaaaacgcc 277  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27741487 aacccaggtaacatcatacaacaagaaaattgctcctcaaaattacactcacaaaacgcc 27741428  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 14993563 - 14993614
Alignment:
Q  21 acatcatcacaagcaaccacaaaaacaacttccacaattacattccgctgct 72  Q
    ||||||||||||||   |||||||||||||||||| ||||||||||||||||    
T  14993563 acatcatcacaagccgtcacaaaaacaacttccaccattacattccgctgct 14993614  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 209
Target Start/End: Original strand, 43275672 - 43275718
Alignment:
Q  162 cattagcactcccaagcaccttcatccaaaaacacacctcccaaagaa 209  Q
    ||||||| ||||||||||||||||||| |||||||||||| |||||||    
T  43275672 cattagctctcccaagcaccttcatcc-aaaacacacctcacaaagaa 43275718  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 27741554 - 27741510
Alignment:
Q  161 tcattagcactcccaagcaccttcatccaaaaacacacctcccaa 205  Q
    |||||||  ||||||| || |||||||||||||||||||||||||    
T  27741554 tcattagttctcccaaacatcttcatccaaaaacacacctcccaa 27741510  T

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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 162 - 282
Target Start/End: Original strand, 22577505 - 22577635
Alignment:
Q  162 cattagcactcccaagcaccttcatccaaaaacacacctcccaaagaa--------acag--caaaaaccccggtaacatcatacaacaagaaaattgct 251  Q
    ||||||| ||||||| |||||||||||||||| |||||||||||||||        || |  |||||||||||||||||||| |||||||||||||| ||    
T  22577505 cattagctctcccaaacaccttcatccaaaaatacacctcccaaagaacagcaaaaaccgaccaaaaaccccggtaacatcaaacaacaagaaaattcct 22577604  T
Q  252 cctcaaaattacactcacaaaacgccctatg 282  Q
    ||| |||| |  |||||||||||||||||||    
T  22577605 cctaaaaaatgaactcacaaaacgccctatg 22577635  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 22577429 - 22577472
Alignment:
Q  21 acatcatcacaagcaaccacaaaaacaacttccacaattacatt 64  Q
    ||||||||||||||| |||||||||||||||| || ||||||||    
T  22577429 acatcatcacaagcagccacaaaaacaacttcgaccattacatt 22577472  T

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Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 209
Target Start/End: Original strand, 54194 - 54241
Alignment:
Q  162 cattagcactcccaagcaccttcatccaaaaacacacctcccaaagaa 209  Q
    ||||||| ||||||||||||||||||||||||||||| | ||||||||    
T  54194 cattagctctcccaagcaccttcatccaaaaacacactttccaaagaa 54241  T

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Target: scaffold0009; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 274
Target Start/End: Original strand, 54379 - 54440
Alignment:
Q  213 gcaaaaaccccggtaacatcatacaacaagaaaattgctcctcaaaattacactcacaaaac 274  Q
    |||||||| ||  |||||| |||||||||||||||||||| |||| ||||||  ||||||||    
T  54379 gcaaaaacgcctataacattatacaacaagaaaattgctcttcaatattacagccacaaaac 54440  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 209
Target Start/End: Complemental strand, 7767418 - 7767372
Alignment:
Q  162 cattagcactcccaagcaccttcatccaaaaacacacctcccaaagaa 209  Q
    ||||||| ||||||||||||||||||| |||||||||||| |||||||    
T  7767418 cattagctctcccaagcaccttcatcc-aaaacacacctcacaaagaa 7767372  T

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