View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0758_low_42 (Length: 278)
Name: NF0758_low_42
Description: NF0758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0758_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 4 - 188
Target Start/End: Complemental strand, 45546545 - 45546361
Alignment:
| Q |
4 |
agtgacattgacacatggaccagaagagcccactgagcctgagcctgagcctgagaagaagtctgttatgagtagggtgaaggcaaaggctaggaaagtt |
103 |
Q |
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| T |
45546545 |
agtgacactgacacatggaccagaagagcccactaattctgagcctgagcctgagaagaagtctgttatgagtagggtgaaggcaaaggctaggaaagtt |
45546446 |
T |
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| Q |
104 |
agggacagtattaagaagcatggtcagaatgtatttgatcatggtagtggacatgacactgaaactcagcatattcctgatgatg |
188 |
Q |
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| T |
45546445 |
agggacagtattaagaagcatggtcagaatgtatttgatcatggtagtggacatgacactgaaactcagcatattcctgatgatg |
45546361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 56 - 187
Target Start/End: Complemental strand, 45551732 - 45551601
Alignment:
| Q |
56 |
gagaagaagtctgttatgagtagggtgaaggcaaaggctaggaaagttagggacagtattaagaagcatggtcagaatgtatttgatcatggtagtggac |
155 |
Q |
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|||||||| |||||| ||| || ||||||||||||||||| |||| ||| ||||| ||||| || || ||||| | ||| |||||||||||| ||||| |
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| T |
45551732 |
gagaagaaatctgttctgaataaggtgaaggcaaaggctaagaaaattaaggacacaattaaaaaacacggtcaacaagtacttgatcatggtaatggac |
45551633 |
T |
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| Q |
156 |
atgacactgaaactcagcatattcctgatgat |
187 |
Q |
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| T |
45551632 |
ataacaatgaaattcagcatactcatgatgat |
45551601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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