View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0758_low_47 (Length: 271)

Name: NF0758_low_47
Description: NF0758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0758_low_47
NF0758_low_47
[»] chr4 (4 HSPs)
chr4 (108-246)||(48912625-48912763)
chr4 (126-241)||(48965095-48965210)
chr4 (129-241)||(48957910-48958022)
chr4 (142-232)||(48967233-48967323)
[»] scaffold0536 (2 HSPs)
scaffold0536 (112-241)||(6795-6924)
scaffold0536 (112-241)||(10777-10906)
[»] chr2 (3 HSPs)
chr2 (142-232)||(13448138-13448228)
chr2 (114-232)||(13439975-13440093)
chr2 (126-239)||(13454602-13454715)
[»] chr5 (1 HSPs)
chr5 (143-235)||(28385106-28385198)
[»] chr8 (1 HSPs)
chr8 (142-217)||(12641795-12641870)
[»] chr7 (1 HSPs)
chr7 (142-235)||(3417841-3417934)


Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 108 - 246
Target Start/End: Original strand, 48912625 - 48912763
Alignment:
Q  108 gtttggagggataatattgagaaggttgtgaagcgattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaag 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912625 gtttggagggataatattgagaaggttgtgaagcgattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaag 48912724  T
Q  208 ctaaacatgcaattaaagaaggtggttcatctcactcga 246  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  48912725 ctaaacatgcaattaaagaaggtggttcatctcattcga 48912763  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 241
Target Start/End: Complemental strand, 48965210 - 48965095
Alignment:
Q  126 gagaaggttgtgaagcgattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaag 225  Q
    ||||||| ||||| | |||||||||||||||||||||||||||||||||| |||   | ||||| ||||||||| || || |||| ||  || ||| |||    
T  48965210 gagaaggctgtgaggagattgatggacagtggtgatgaagctgagaaaattagaagtcgtgctcaagagtttggagaaaaggctagacgagccattcaag 48965111  T
Q  226 aaggtggttcatctca 241  Q
    ||||||| || |||||    
T  48965110 aaggtggctcgtctca 48965095  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 241
Target Start/End: Complemental strand, 48958022 - 48957910
Alignment:
Q  129 aaggttgtgaagcgattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaag 228  Q
    |||| ||||||| ||||||||||| ||||||||||||||||| |||||| ||| | ||||| |||||| || || || |||| ||  ||  || ||||||    
T  48958022 aaggctgtgaagagattgatggacggtggtgatgaagctgaggaaatcaaacagcgtgctcaagagttcggagaaaaggctacacgagctgttcaagaag 48957923  T
Q  229 gtggttcatctca 241  Q
    |||| ||||||||    
T  48957922 gtggatcatctca 48957910  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 48967323 - 48967233
Alignment:
Q  142 gattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaaggtgg 232  Q
    |||||||||||| ||  |||||||||||||| |||||||||| ||||||||| ||||| || || |||| ||  ||| || ||||||||||    
T  48967323 gattgatggacaatgacgatgaagctgagaagatcagacaacgtgctcgagactttggagaaaaggctacacgagcacttcaagaaggtgg 48967233  T

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Target: scaffold0536 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 112 - 241
Target Start/End: Original strand, 6795 - 6924
Alignment:
Q  112 ggagggataatattgagaaggttgtgaagcgattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaa 211  Q
    ||||||||| ||||||||||| ||||| | ||||||||||  ||||||| |||||||||||||||| | |  ||||||||||||||||||| || |||||    
T  6795 ggagggatagtattgagaaggctgtgaggagattgatggatggtggtgacgaagctgagaaaatcaaaaagtatgctcgagagtttggggataaggctaa 6894  T
Q  212 acatgcaattaaagaaggtggttcatctca 241  Q
    ||||||   | |||||||||||||||||||    
T  6895 acatgcggctcaagaaggtggttcatctca 6924  T

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Target: scaffold0536; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 112 - 241
Target Start/End: Original strand, 10777 - 10906
Alignment:
Q  112 ggagggataatattgagaaggttgtgaagcgattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaa 211  Q
    ||||||||  ||||||||||||||||||| |||||||||||| | || ||| |||||||| |||||||| ||||||||||||||||||||| || |||||    
T  10777 ggagggatggtattgagaaggttgtgaagagattgatggacaatagttatgtagctgagataatcagacgacatgctcgagagtttggggataaggctaa 10876  T
Q  212 acatgcaattaaagaaggtggttcatctca 241  Q
    |  |||   | | |||||||||||||||||    
T  10877 atgtgcggctcaggaaggtggttcatctca 10906  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 13448228 - 13448138
Alignment:
Q  142 gattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaaggtgg 232  Q
    ||||||||||| |||||||||||||||| || ||||| | || ||||||||||||||| || ||||||| ||| || ||| ||||||||||    
T  13448228 gattgatggacggtggtgatgaagctgaaaatatcaggctacgtgctcgagagtttggagaaaaagctatacaagctattcaagaaggtgg 13448138  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 232
Target Start/End: Complemental strand, 13440093 - 13439975
Alignment:
Q  114 agggataatattgagaaggttgtgaagcgattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaac 213  Q
    |||||||| || ||||||| ||||| | |||||||||| | ||||||||||||| | || || || | || ||||| ||||||||| || || |||| ||    
T  13440093 agggataacatagagaaggctgtgaggagattgatggagaatggtgatgaagctaaaaatatgaggctacttgctcaagagtttggagaaaaggctacac 13439994  T
Q  214 atgcaattaaagaaggtgg 232  Q
    | || ||| ||||||||||    
T  13439993 aagctattcaagaaggtgg 13439975  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 239
Target Start/End: Complemental strand, 13454715 - 13454602
Alignment:
Q  126 gagaaggttgtgaagcgattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaag 225  Q
    ||||||| ||||| | ||||||||| | |||||||||||||| | || |||||   || ||||||||||||||| || || |||| ||| || ||| ||     
T  13454715 gagaaggctgtgaggagattgatgggcggtggtgatgaagctaaaaatatcagggtacgtgctcgagagtttggagaaaaggctacacaagctattcaaa 13454616  T
Q  226 aaggtggttcatct 239  Q
    ||||||| ||||||    
T  13454615 aaggtggctcatct 13454602  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 235
Target Start/End: Complemental strand, 28385198 - 28385106
Alignment:
Q  143 attgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaaggtggttc 235  Q
    |||||||||| |||| ||||||||||| || || ||||||| |||||||||||| || ||||| |||| ||  ||  ||||||||||||||||    
T  28385198 attgatggacggtggcgatgaagctgaaaatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgttaaagaaggtggttc 28385106  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 217
Target Start/End: Original strand, 12641795 - 12641870
Alignment:
Q  142 gattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgc 217  Q
    |||||||||||  ||||||||||||| || |||||||||||| ||||| |||||||||| | || |||| ||||||    
T  12641795 gattgatggacgatggtgatgaagctaaggaaatcagacaacgtgctcaagagtttgggaaaaaggctacacatgc 12641870  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 235
Target Start/End: Original strand, 3417841 - 3417934
Alignment:
Q  142 gattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaaggtggttc 235  Q
    |||||||||||||| ||||||| |||||    || |||| || |||||||||| |||| ||||| |||||||  || ||| |||||||||||||    
T  3417841 gattgatggacagtagtgatgaggctgaaggtatgagactacgtgctcgagagcttggagagaaggctaaacgagctattcaagaaggtggttc 3417934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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