View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0758_low_53 (Length: 262)

Name: NF0758_low_53
Description: NF0758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0758_low_53
NF0758_low_53
[»] chr2 (5 HSPs)
chr2 (1-234)||(16549788-16550021)
chr2 (140-234)||(1979988-1980082)
chr2 (138-234)||(4789218-4789314)
chr2 (138-232)||(16107347-16107441)
chr2 (138-234)||(10733859-10733956)
[»] chr1 (3 HSPs)
chr1 (138-232)||(2981105-2981199)
chr1 (138-234)||(18547880-18547976)
chr1 (137-212)||(12252543-12252618)
[»] chr5 (1 HSPs)
chr5 (138-234)||(14460134-14460230)
[»] chr8 (2 HSPs)
chr8 (138-234)||(26588111-26588207)
chr8 (137-216)||(1165472-1165550)
[»] chr3 (3 HSPs)
chr3 (153-234)||(8354147-8354228)
chr3 (137-238)||(5701026-5701127)
chr3 (153-230)||(22349251-22349328)
[»] chr6 (3 HSPs)
chr6 (137-234)||(7732648-7732745)
chr6 (184-232)||(24585721-24585769)
chr6 (155-234)||(32934080-32934158)
[»] chr7 (1 HSPs)
chr7 (150-212)||(6015811-6015873)
[»] chr4 (1 HSPs)
chr4 (153-193)||(38159313-38159353)


Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 16549788 - 16550021
Alignment:
Q  1 aagtgtctcacaaatttgataaagcagtagtgtcgtagcactttaattcctgttataaacaaatgttgaatgaagtttgttacaatttgttatttatttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  16549788 aagtgtctcacaaatttgataaagcagtagtgtcgtagcactttaattcctgttagaaacaaatgttgaatgaagtttgttacagtttgttatttatttt 16549887  T
Q  101 ctcagttatagatatgttgtagttctgcactcagcgccagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctataca 200  Q
    |||||||||||||||||||||||||||||||||| | ||||||| |||||| ||||||||||||||  ||||||||||||||||||||||||| ||||||    
T  16549888 ctcagttatagatatgttgtagttctgcactcagtgtcagggacggattcaaaaatttcagaaagtcgggtcaaactcgcttatcataaatatttataca 16549987  T
Q  201 aaaatatataaaaccacgtccattaaaatgatga 234  Q
    ||||||||||||||||| ||||||||||||||||    
T  16549988 aaaatatataaaaccacatccattaaaatgatga 16550021  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 140 - 234
Target Start/End: Complemental strand, 1980082 - 1979988
Alignment:
Q  140 gggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatgatga 234  Q
    ||||| ||| |||||||||||||||||| ||||||  ||| ||||||||||||| || |||||||||||||||| ||   |||||||||||||||    
T  1980082 gggacggatccagaaatttcagaaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaatcataaccattaaaatgatga 1979988  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 234
Target Start/End: Original strand, 4789218 - 4789314
Alignment:
Q  138 cagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatgatga 234  Q
    ||||||| ||| || |||||||| |||||| ||||||  ||| ||||||||||||| || |||||||||||||||||||   |||||||||||||||    
T  4789218 cagggacggatccaaaaatttcataaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatga 4789314  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 232
Target Start/End: Original strand, 16107347 - 16107441
Alignment:
Q  138 cagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatgat 232  Q
    ||||||| ||| ||| |||||||||||||  ||||||  ||| || |||||||||| ||||||||||||||||||||||   |||||||||||||    
T  16107347 cagggacggatccaggaatttcagaaagtagggtcaagatcgtttgtcataaatatttatacaaaaatatataaaaccataaccattaaaatgat 16107441  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 234
Target Start/End: Complemental strand, 10733956 - 10733859
Alignment:
Q  138 cagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataa-atatctatacaaaaatatataaaaccacgtccattaaaatgatga 234  Q
    ||||||| ||| ||||||||| |||||||| ||||||  ||| ||||||| | |||| || |||||||||||||||||||   |||||||||||||||    
T  10733956 cagggacggatccagaaattttagaaagtggggtcaagatcgtttatcattatatatttaaacaaaaatatataaaaccataaccattaaaatgatga 10733859  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 138 - 232
Target Start/End: Complemental strand, 2981199 - 2981105
Alignment:
Q  138 cagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatgat 232  Q
    ||||||| ||| |||||||||||||||||| ||||||  ||| || |||||||||| ||||||||||||||||||||||   |||||||||||||    
T  2981199 cagggacggatccagaaatttcagaaagtggggtcaagatcgtttgtcataaatatttatacaaaaatatataaaaccataaccattaaaatgat 2981105  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 138 - 234
Target Start/End: Original strand, 18547880 - 18547976
Alignment:
Q  138 cagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatgatga 234  Q
    ||||||| ||| ||||||||||| |||||| ||||||  ||| ||||||||||||| || |||||||||||||||||||   |||||||||||||||    
T  18547880 cagggacggatccagaaatttcataaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatga 18547976  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 212
Target Start/End: Complemental strand, 12252618 - 12252543
Alignment:
Q  137 ccagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaa 212  Q
    ||||| || ||| |||||||||||  ||||| ||||||| | | ||||||||||||| ||||||||||||||||||    
T  12252618 ccaggaacggatccagaaatttcaataagtggggtcaaaattgtttatcataaatatttatacaaaaatatataaa 12252543  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 138 - 234
Target Start/End: Original strand, 14460134 - 14460230
Alignment:
Q  138 cagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatgatga 234  Q
    ||||||| ||| ||| |||||||||||||| |||||  |||| ||||||||||||| || |||||||||||||||||||   |||||||||||||||    
T  14460134 cagggacggatccaggaatttcagaaagtggggtcacgctcgtttatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatga 14460230  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 234
Target Start/End: Original strand, 26588111 - 26588207
Alignment:
Q  138 cagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatgatga 234  Q
    ||||||| ||| |||||||||||||||| | ||||||  ||| ||||||||||||| || |||||||||||||||| ||   |||||||||||||||    
T  26588111 cagggacggatccagaaatttcagaaagcggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaatcataaccattaaaatgatga 26588207  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 1165550 - 1165472
Alignment:
Q  137 ccagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaacca 216  Q
    |||||||||||| |||||||||||||||||| |||||| |||   ||| ||||| || ||||||||| ||||||||||||    
T  1165550 ccagggacagatccagaaatttcagaaagtggggtcaagctcaggtattataaa-atttatacaaaattatataaaacca 1165472  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 153 - 234
Target Start/End: Original strand, 8354147 - 8354228
Alignment:
Q  153 aaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatgatga 234  Q
    |||||||| |||| ||||||||  ||| ||||||||||||| || |||||||||||||||||||   |||||||||||||||    
T  8354147 aaatttcaaaaagcgaggtcaagatcgtttatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatga 8354228  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 238
Target Start/End: Complemental strand, 5701127 - 5701026
Alignment:
Q  137 ccagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatgatgatg 236  Q
    |||||||  ||| |||||||||||||||||  ||||||  ||| || |||||||||| |||||||| |||| ||||||||   ||||||||||||| |||    
T  5701127 ccagggatggatccagaaatttcagaaagtagggtcaagatcgtttgtcataaatatttatacaaagatatctaaaaccataaccattaaaatgataatg 5701028  T
Q  237 tc 238  Q
    ||    
T  5701027 tc 5701026  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 230
Target Start/End: Original strand, 22349251 - 22349328
Alignment:
Q  153 aaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatg 230  Q
    |||||| |||||| |||||||| |||| || | |||||||| ||||||||||||||||||| || | |||||| ||||    
T  22349251 aaatttgagaaagagaggtcaagctcgttttttataaatatttatacaaaaatatataaaatcatgaccattataatg 22349328  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 234
Target Start/End: Original strand, 7732648 - 7732745
Alignment:
Q  137 ccagggacagattcagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatgatga 234  Q
    |||||||| ||| ||  |||| ||||||||| ||||||  ||| ||||||||||||| || |||||||||||||||| ||   |||||||||||||||    
T  7732648 ccagggacggatccaagaattacagaaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaatcataaccattaaaatgatga 7732745  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 24585721 - 24585769
Alignment:
Q  184 tcataaatatctatacaaaaatatataaaaccacgtccattaaaatgat 232  Q
    |||||||||| ||||||||||||||||||||||   |||||||||||||    
T  24585721 tcataaatatttatacaaaaatatataaaaccataaccattaaaatgat 24585769  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 234
Target Start/End: Original strand, 32934080 - 32934158
Alignment:
Q  155 atttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaaaccacgtccattaaaatgatga 234  Q
    |||||||||| || ||||||  ||| ||||||||||||| || |||||||||||| ||||||   |||||||||||||||    
T  32934080 atttcagaaaatggggtcaagatcgtttatcataaatatttaaacaaaaatatat-aaaccatagccattaaaatgatga 32934158  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 6015873 - 6015811
Alignment:
Q  150 cagaaatttcagaaagtgaggtcaaactcgcttatcataaatatctatacaaaaatatataaa 212  Q
    |||||||||||  ||||| ||||||| | | ||||||||||||| ||||||||||||||||||    
T  6015873 cagaaatttcaataagtggggtcaaaattgtttatcataaatatttatacaaaaatatataaa 6015811  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 38159313 - 38159353
Alignment:
Q  153 aaatttcagaaagtgaggtcaaactcgcttatcataaatat 193  Q
    |||||||||||||||||||||| |||| |||||||||||||    
T  38159313 aaatttcagaaagtgaggtcaagctcgtttatcataaatat 38159353  T

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