View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0758_low_55 (Length: 260)
Name: NF0758_low_55
Description: NF0758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0758_low_55 |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 29 - 260
Target Start/End: Original strand, 7095205 - 7095436
Alignment:
| Q |
29 |
aaagaggtctcctctgtctcccgcactaggttccaatgaattattataatcccctttaggttctctagagtcctcgtagggcttcttcccatttcctcct |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7095205 |
aaagaggtctcctctgtctcccgcactaggttccaatgaattattataatcccctttaggttctctagagtcctcgtagggcttcttcccatttcctcct |
7095304 |
T |
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| Q |
129 |
cgtccacgattttgattgctggaacgagttggtcccccacagttattgttattccctcgagcaagtctcttattcttcatcgcttctatttctctacact |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
7095305 |
cgtccacgattttgattgctggaacgagttggtcccccacagttattgttattccctcgagcaagtctcttattcttcatcgcttctatttctctacatt |
7095404 |
T |
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| Q |
229 |
tttctaccaaaggatggaattgttgaattccc |
260 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
7095405 |
tttctaccaaaggatggaattgttgaattccc |
7095436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 29 - 260
Target Start/End: Complemental strand, 8376596 - 8376365
Alignment:
| Q |
29 |
aaagaggtctcctctgtctcccgcactaggttccaatgaattattataatcccctttaggttctctagagtcctcgtagggcttcttcccatttcctcct |
128 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8376596 |
aaagaggtctcctctgtctccagcactaggttccaatgaattattataatcccctttaggttctctagagtcctcgtagggcttcttcccatttcctcct |
8376497 |
T |
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| Q |
129 |
cgtccacgattttgattgctggaacgagttggtcccccacagttattgttattccctcgagcaagtctcttattcttcatcgcttctatttctctacact |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8376496 |
cgtccacgattttgattgctggaacgagttggtcccccacagttattgttattccctcgagcaagtctcttattcttcatcgcttctatttctctacact |
8376397 |
T |
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| Q |
229 |
tttctaccaaaggatggaattgttgaattccc |
260 |
Q |
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| T |
8376396 |
tttctaccaaaggatggaattgttgaattccc |
8376365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 15421029 - 15420963
Alignment:
| Q |
194 |
tctcttattcttcatcgcttctatttctctacacttttctaccaaaggatggaattgttgaattccc |
260 |
Q |
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|||||||||||||||||| ||||||||||| |||||||| |||||||| |||||||||||||||||| |
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| T |
15421029 |
tctcttattcttcatcgcctctatttctctgcacttttcaaccaaaggctggaattgttgaattccc |
15420963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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