View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0758_low_6 (Length: 466)
Name: NF0758_low_6
Description: NF0758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0758_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 254
Target Start/End: Complemental strand, 17944783 - 17944542
Alignment:
| Q |
13 |
aatatattgaagtaagttcttgtttatttctctgtgttttaccaaagaaaaatcatcagctcatatcattaagnnnnnnntattgattacaatgaggtaa |
112 |
Q |
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| T |
17944783 |
aatatattgaagtaagttctagtttatttctctgtgttttaccaaagaaaaatcatcagctcatatcattaagaaaaaaatattgattacaatgaggtaa |
17944684 |
T |
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| Q |
113 |
actcatcaacgattctttgtttggagattaatttacgaagtccatggatctttctcattgcaaagcgttggttcatgagaagagtccgaggatcgtcgca |
212 |
Q |
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| T |
17944683 |
actcatcaacgattctttgtttggagattaatttacgaagtccatggatctttctcattgcaaagcgttggttcatgagaagagcccgaggatcgtcgca |
17944584 |
T |
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| Q |
213 |
ttaagactcttacaaaccactatttgaccgctagacatgctt |
254 |
Q |
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| T |
17944583 |
ttaagactcttacaaaccactatttgaccactagacatgctt |
17944542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 13 - 268
Target Start/End: Complemental strand, 19416590 - 19416334
Alignment:
| Q |
13 |
aatatattgaagtaagttcttgtttatttctctgtgttttaccaaagaaaaatcatcagctcatatcattaagnnnnnnntattgattacaatgaggtaa |
112 |
Q |
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| T |
19416590 |
aatatattgaagtaagttctagtttatttctctgtgttttaccaaagaaaactcatcagctcatatcattaagaaaaaa-tattgattacaatgaggtaa |
19416492 |
T |
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| Q |
113 |
actcatcaacgattctttgtttggagattaatttacgaagtccatggatctttctcattgcaaagcgttggttcatgagaagagtccgaggatcgtcgca |
212 |
Q |
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| T |
19416491 |
actcatcaaccattctttgtttggagattaatttatgaagtccatggatctttctcattgcaaagcgttggttcatgagaagagtccgaggatcgtcgca |
19416392 |
T |
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| Q |
213 |
ttaagactcttacaaaccactatttgaccgctagacatgc--ttgtggatgtctcatt |
268 |
Q |
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| T |
19416391 |
ttaagactcttacaaaccactatttgaccgctaaacatgcttttgtggatgtcccatt |
19416334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 277 - 437
Target Start/End: Complemental strand, 19416265 - 19416105
Alignment:
| Q |
277 |
tcatttgtataattctcattgtttctaatacaacattttcttaagcttttatctctttcttctctgatatcatgattctcaatagaatgtgtttgcaaat |
376 |
Q |
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| T |
19416265 |
tcatttgtaccattctcatagtttctaatacaacattttcttaagcttttatctctttcttctctgatatcatgattctcaatagaatgtgtttgcaaat |
19416166 |
T |
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| Q |
377 |
attacaatttgtgaagtaaaagtggccatagttgatttatcaaagtgagagtctatttctt |
437 |
Q |
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| T |
19416165 |
attacaatttgtgaagtaaaagtgaccatagttgatttattaaagtgagagtctatttctt |
19416105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 288 - 437
Target Start/End: Complemental strand, 17944439 - 17944289
Alignment:
| Q |
288 |
attctcattgtttctaatacaacattttcttaagcttttatctctttcttctctgatatcat-gattctcaatagaatgtgtttgcaaatattacaattt |
386 |
Q |
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| T |
17944439 |
attctcttagtttctaatacaacattttcttaagcttttatctctttcttctctgatatcattgattctcaatagaatgtgttttcaaatattacaattt |
17944340 |
T |
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| Q |
387 |
gtgaagtaaaagtggccatagttgatttatcaaagtgagagtctatttctt |
437 |
Q |
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| T |
17944339 |
gtgaaataaaagtggccatagttgaattattaaagtgagagtctatttctt |
17944289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 19403384 - 19403289
Alignment:
| Q |
15 |
tatattgaagtaagttcttgtttatttctctgtgttttaccaaagaaaaatcatcagctcatatcattaagnnnnnnntattgattacaatgaggtaaa |
113 |
Q |
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||||||||| ||||||| |||||||||| |||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
19403384 |
tatattgaatcaagttctagtttatttct--gtgttttaccaaagaaaactcatcagctcgtatcattaag-aaaaaatattgattacaatgaggtaaa |
19403289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 285 - 349
Target Start/End: Original strand, 15232459 - 15232522
Alignment:
| Q |
285 |
ataattctcattgtttctaatacaacattttcttaagcttttatctctttcttctctgatatcat |
349 |
Q |
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| T |
15232459 |
ataattctcaatgtttccaataaaacattt-cttaagcttttatctctttttcctttgatatcat |
15232522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 36824500 - 36824461
Alignment:
| Q |
288 |
attctcattgtttctaatacaacattttcttaagcttttat |
328 |
Q |
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| T |
36824500 |
attctcattgtttccaatacaaca-tttcttaagcttttat |
36824461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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