View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0758_low_60 (Length: 251)

Name: NF0758_low_60
Description: NF0758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0758_low_60
NF0758_low_60
[»] chr5 (1 HSPs)
chr5 (1-247)||(9056284-9056530)
[»] chr3 (3 HSPs)
chr3 (1-247)||(44169779-44170026)
chr3 (1-247)||(44190075-44190322)
chr3 (1-161)||(6102511-6102672)
[»] chr2 (2 HSPs)
chr2 (1-247)||(32720405-32720641)
chr2 (1-247)||(32728860-32729096)


Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 9056284 - 9056530
Alignment:
Q  1 tgatttacgacctacaattattataggcgctgacgtgttgtatgactcaaatggtgagagaaggatctgtttcaggtctttgtaccttcctttttggatt 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9056284 tgatttacgacctacaattattctaggcgctgacgtgttgtatgactcaaatggtgagagaaggatctgtttcaggtctttgtaccttcctttttggatt 9056383  T
Q  101 tgatgtactaaatcattctttcttttatattatttagcttttgatgacctctttgccactgtgacattcctgctccaaaattcacctggatcaattttta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9056384 tgatgtactaaatcattctttcttttatattatttagcttttgatgacctctttgccactgtgacattcctgctccaaaattcacctggatcaattttta 9056483  T
Q  201 taacttcataccataatagaaggtacttttcattctctgtgctgctc 247  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||    
T  9056484 taacttcataccataatagaaggtacttttcattctcagtgatgctc 9056530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 44170026 - 44169779
Alignment:
Q  1 tgatttacgacctacaattattataggcgctgacgtgttgtatgactcaaatggtgagagaaggatctgtttcaggtctttgtac-cttcctttttggat 99  Q
    ||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  44170026 tgatttacgacttacaattattctaggtgctgacgtgttgtatgactcaaatggtgagagaaggatctgtttcaggtctttgtatacttcctttttggat 44169927  T
Q  100 ttgatgtactaaatcattctttcttttatattatttagcttttgatgacctctttgccactgtgacattcctgctccaaaattcacctggatcaattttt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||    
T  44169926 ttgatgtactaaatcattctttcttttatattatttagcttttgatgacctctttgctactgtgacattcctactccaaaactcacctggatcaattttt 44169827  T
Q  200 ataacttcataccataatagaaggtacttttcattctctgtgctgctc 247  Q
    ||||| |||||||||||||||||||||||||||||||| ||| |||||    
T  44169826 ataacctcataccataatagaaggtacttttcattctcagtgatgctc 44169779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 44190322 - 44190075
Alignment:
Q  1 tgatttacgacctacaattattataggcgctgacgtgttgtatgactcaaatggtgagagaaggatctgtttcaggtctttgtac-cttcctttttggat 99  Q
    ||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  44190322 tgatttacgacttacaattattctaggtgctgacgtgttgtatgactcaaatggtgagagaaggatctgtttcaggtctttgtatacttcctttttggat 44190223  T
Q  100 ttgatgtactaaatcattctttcttttatattatttagcttttgatgacctctttgccactgtgacattcctgctccaaaattcacctggatcaattttt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||    
T  44190222 ttgatgtactaaatcattctttcttttatattatttagcttttgatgacctctttgctactgtgacattcctactccaaaactcacctggatcaattttt 44190123  T
Q  200 ataacttcataccataatagaaggtacttttcattctctgtgctgctc 247  Q
    ||||| |||||||||||||||||||||||||||||||| ||| |||||    
T  44190122 ataacctcataccataatagaaggtacttttcattctcagtgatgctc 44190075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 6102672 - 6102511
Alignment:
Q  1 tgatttacgacctacaattattataggcgctgacgtgttgtatgactcaaatggtgagagaaggatctgtttcaggtctttgta-ccttcctttttggat 99  Q
    ||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  6102672 tgatttacgacttacaattattctaggtgctgacgtgttgtatgactcaaatggtgagagaaggatctgtttgaggtctttgtaaccttcctttttggat 6102573  T
Q  100 ttgatgtactaaatcattctttcttttatattatttagcttttgatgacctctttgccactg 161  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6102572 ttgatgtactaaaccattctttcttttatattatttagcttttgatgacctctttgccactg 6102511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 32720641 - 32720405
Alignment:
Q  1 tgatttacgacctacaattattataggcgctgacgtgttgtatgactcaaatggtgagagaaggatctgtttcaggtctttgtaccttcctttttggatt 100  Q
    ||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||    
T  32720641 tgatttacgacttacaattattctaggtgctgacgtgttgtatgactcaaatggtgagagaaggatctgtttcaggtctttgt----------ttggatt 32720552  T
Q  101 tgatgtactaaatcattctttcttttatattatttagcttttgatgacctctttgccactgtgacattcctgctccaaaattcacctggatcaattttta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||    
T  32720551 tgatgtactaaatcattctttcttttatattatttagcttttgatgacctctttgctactgtgacattcctactccaaaactcacctggatcaattttta 32720452  T
Q  201 taacttcataccataatagaaggtacttttcattctctgtgctgctc 247  Q
    |||| |||||||||||||||||||||||||||||||| ||| |||||    
T  32720451 taacctcataccataatagaaggtacttttcattctcagtgatgctc 32720405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 32729096 - 32728860
Alignment:
Q  1 tgatttacgacctacaattattataggcgctgacgtgttgtatgactcaaatggtgagagaaggatctgtttcaggtctttgtaccttcctttttggatt 100  Q
    ||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||    
T  32729096 tgatttacgacttacaattattctaggtgctgacgtgttgtatgactcaaatggtgagagaaggatctgtttcaggtctttgt----------ttggatt 32729007  T
Q  101 tgatgtactaaatcattctttcttttatattatttagcttttgatgacctctttgccactgtgacattcctgctccaaaattcacctggatcaattttta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||    
T  32729006 tgatgtactaaatcattctttcttttatattatttagcttttgatgacctctttgctactgtgacattcctactccaaaactcacctggatcaattttta 32728907  T
Q  201 taacttcataccataatagaaggtacttttcattctctgtgctgctc 247  Q
    |||| |||||||||||||||||||||||||||||||| ||| |||||    
T  32728906 taacctcataccataatagaaggtacttttcattctcagtgatgctc 32728860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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