View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0758_low_63 (Length: 250)

Name: NF0758_low_63
Description: NF0758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0758_low_63
NF0758_low_63
[»] chr6 (11 HSPs)
chr6 (30-250)||(34882845-34883064)
chr6 (132-191)||(9024166-9024225)
chr6 (125-163)||(29711265-29711303)
chr6 (128-164)||(13211298-13211334)
chr6 (129-165)||(15443702-15443738)
chr6 (128-159)||(2140503-2140534)
chr6 (130-191)||(12696332-12696393)
chr6 (128-157)||(34446571-34446600)
chr6 (128-164)||(6299518-6299554)
chr6 (128-164)||(6306328-6306364)
chr6 (129-161)||(33141265-33141297)
[»] chr5 (16 HSPs)
chr5 (134-191)||(41558644-41558701)
chr5 (118-164)||(11596472-11596518)
chr5 (129-193)||(23287336-23287401)
chr5 (127-159)||(28296333-28296365)
chr5 (130-165)||(22423828-22423863)
chr5 (127-165)||(38749579-38749617)
chr5 (128-186)||(40211962-40212020)
chr5 (129-158)||(41558706-41558735)
chr5 (127-164)||(43208291-43208328)
chr5 (127-155)||(2577206-2577234)
chr5 (128-164)||(16434399-16434435)
chr5 (128-164)||(18607114-18607150)
chr5 (127-155)||(18919048-18919076)
chr5 (127-159)||(19737504-19737536)
chr5 (128-164)||(37472614-37472650)
chr5 (128-164)||(41600904-41600940)
[»] chr4 (20 HSPs)
chr4 (127-191)||(18513231-18513295)
chr4 (127-164)||(14465311-14465348)
chr4 (128-164)||(5654608-5654644)
chr4 (128-164)||(10546154-10546190)
chr4 (128-159)||(43188618-43188649)
chr4 (127-157)||(7012071-7012101)
chr4 (125-171)||(11135304-11135350)
chr4 (129-171)||(23915136-23915178)
chr4 (129-163)||(25390904-25390938)
chr4 (128-165)||(19230325-19230362)
chr4 (128-157)||(20743302-20743331)
chr4 (132-165)||(26276025-26276058)
chr4 (128-157)||(32910557-32910586)
chr4 (127-164)||(34589723-34589760)
chr4 (129-158)||(48845148-48845177)
chr4 (129-157)||(31243572-31243600)
chr4 (130-186)||(35952612-35952668)
chr4 (128-164)||(43299988-43300024)
chr4 (128-164)||(43300622-43300658)
chr4 (131-171)||(44796972-44797012)
[»] chr3 (13 HSPs)
chr3 (127-190)||(7948963-7949027)
chr3 (127-159)||(9210847-9210879)
chr3 (128-157)||(16789674-16789703)
chr3 (128-157)||(20691325-20691354)
chr3 (128-157)||(21149073-21149102)
chr3 (127-164)||(40150588-40150625)
chr3 (128-164)||(12704674-12704710)
chr3 (128-164)||(13807175-13807211)
chr3 (136-164)||(15864259-15864287)
chr3 (127-155)||(25074794-25074822)
chr3 (128-164)||(25908856-25908892)
chr3 (129-165)||(41319326-41319362)
chr3 (128-164)||(52369781-52369817)
[»] chr2 (10 HSPs)
chr2 (127-165)||(40681987-40682025)
chr2 (127-164)||(18570977-18571014)
chr2 (128-159)||(30563415-30563446)
chr2 (125-159)||(2073945-2073979)
chr2 (127-157)||(10535783-10535813)
chr2 (132-190)||(13204035-13204093)
chr2 (129-171)||(44605149-44605191)
chr2 (127-164)||(16630800-16630837)
chr2 (127-164)||(31026700-31026737)
chr2 (129-165)||(12933752-12933788)
[»] chr7 (10 HSPs)
chr7 (127-164)||(2525861-2525898)
chr7 (127-164)||(35238201-35238238)
chr7 (127-164)||(38134423-38134460)
chr7 (128-164)||(44172907-44172943)
chr7 (131-185)||(12843171-12843225)
chr7 (129-163)||(41099759-41099793)
chr7 (132-193)||(5548686-5548747)
chr7 (131-164)||(18678157-18678190)
chr7 (130-187)||(32308128-32308185)
chr7 (128-164)||(21247753-21247789)
[»] chr1 (9 HSPs)
chr1 (128-165)||(40747789-40747826)
chr1 (128-164)||(11571591-11571627)
chr1 (130-165)||(1262892-1262927)
chr1 (129-164)||(3921674-3921709)
chr1 (127-157)||(42325565-42325595)
chr1 (128-162)||(48785283-48785317)
chr1 (130-191)||(34712373-34712434)
chr1 (132-164)||(2445880-2445912)
chr1 (127-159)||(11412790-11412822)
[»] scaffold0037 (1 HSPs)
scaffold0037 (125-165)||(102908-102948)
[»] chr8 (13 HSPs)
chr8 (128-164)||(30068045-30068081)
chr8 (129-165)||(34201062-34201098)
chr8 (130-165)||(8798847-8798882)
chr8 (125-164)||(9936817-9936856)
chr8 (127-162)||(14230063-14230098)
chr8 (130-164)||(29198496-29198530)
chr8 (125-159)||(34739083-34739117)
chr8 (127-160)||(4114224-4114257)
chr8 (130-187)||(22651984-22652041)
chr8 (128-164)||(3508058-3508094)
chr8 (132-164)||(10441213-10441245)
chr8 (129-157)||(28883902-28883930)
chr8 (129-157)||(40063958-40063986)
[»] scaffold0571 (1 HSPs)
scaffold0571 (128-159)||(7696-7727)
[»] scaffold0598 (1 HSPs)
scaffold0598 (128-157)||(8077-8106)
[»] scaffold0007 (1 HSPs)
scaffold0007 (128-165)||(225284-225321)


Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 30 - 250
Target Start/End: Original strand, 34882845 - 34883064
Alignment:
Q  30 tatattactatcatagtggacatgtcagtgtcgtgtctatatagaatattggaatatgcaatgaaaagatgataccgaagacgaacaccgtccatatcga 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34882845 tatattactatcatagtggacatgtcagtgtcgtgtctatatagaatattggaatatgcaatgaaaagatgataccgaagacgaacaccgtccatatcga 34882944  T
Q  130 taataatttgagaaaatgacataattcaatataattccatgtatcagagtcgtgtcggacactgaaacatgccatatagacatacctgatcaacagaggg 229  Q
    |||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34882945 taataatttgagaaaatga-gtaattcaatataattccatgcatcagagtcgtgtcggacactggaacatgccatatagacatacctgatcaacagaggg 34883043  T
Q  230 accagcggttatttttgcaga 250  Q
    |||||||||||||||||||||    
T  34883044 accagcggttatttttgcaga 34883064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 191
Target Start/End: Complemental strand, 9024225 - 9024166
Alignment:
Q  132 ataatttgagaaaatgacataattcaatataattccatgtatcagagtcgtgtcggacac 191  Q
    |||||||||||||||||||||||||||| ||||   |||| |||| ||||||||||||||    
T  9024225 ataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgtcgtgtcggacac 9024166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 125 - 163
Target Start/End: Original strand, 29711265 - 29711303
Alignment:
Q  125 atcgataataatttgagaaaatgacataattcaatataa 163  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  29711265 atcgataataatttgagaaaatgacataattcattataa 29711303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 13211334 - 13211298
Alignment:
Q  128 gataataatttgagaaaatgacataattcaatataat 164  Q
    |||||||||||||||||||||||||||| ||||||||    
T  13211334 gataataatttgagaaaatgacataatttaatataat 13211298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 165
Target Start/End: Original strand, 15443702 - 15443738
Alignment:
Q  129 ataataatttgagaaaatgacataattcaatataatt 165  Q
    |||||||||||||||||| ||||||||||||||||||    
T  15443702 ataataatttgagaaaataacataattcaatataatt 15443738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 159
Target Start/End: Complemental strand, 2140534 - 2140503
Alignment:
Q  128 gataataatttgagaaaatgacataattcaat 159  Q
    ||||||||||||||||||||||||||||||||    
T  2140534 gataataatttgagaaaatgacataattcaat 2140503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 191
Target Start/End: Original strand, 12696332 - 12696393
Alignment:
Q  130 taataatttgagaaaatgacataattcaatataattccatgtatcagagtcgtgtcggacac 191  Q
    ||||||||||| ||||| |||||||||| | ||||| || || |||| ||||||||||||||    
T  12696332 taataatttgaaaaaattacataattcagtgtaattacaagtgtcagtgtcgtgtcggacac 12696393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 157
Target Start/End: Original strand, 34446571 - 34446600
Alignment:
Q  128 gataataatttgagaaaatgacataattca 157  Q
    ||||||||||||||||||||||||||||||    
T  34446571 gataataatttgagaaaatgacataattca 34446600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 6299518 - 6299554
Alignment:
Q  128 gataataatttgagaaaatgacataattcaatataat 164  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  6299518 gataataatttgagaaaatgatataattcaatgtaat 6299554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 6306328 - 6306364
Alignment:
Q  128 gataataatttgagaaaatgacataattcaatataat 164  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  6306328 gataataatttgagaaaatgatataattcaatgtaat 6306364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 33141265 - 33141297
Alignment:
Q  129 ataataatttgagaaaatgacataattcaatat 161  Q
    |||||||||||||||||| ||||||||||||||    
T  33141265 ataataatttgagaaaataacataattcaatat 33141297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 41558701 - 41558644
Alignment:
Q  134 aatttgagaaaatgacataattcaatataattccatgtatcagagtcgtgtcggacac 191  Q
    |||||||||||||||||||||||||| |||||  |||| |||| ||||||||||||||    
T  41558701 aatttgagaaaatgacataattcaatgtaattaaatgtgtcagtgtcgtgtcggacac 41558644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 164
Target Start/End: Complemental strand, 11596518 - 11596472
Alignment:
Q  118 cgtccatatcgataataatttgagaaaatgacataattcaatataat 164  Q
    |||| ||| ||||||||||||||||||||||||||||||||| ||||    
T  11596518 cgtcgataccgataataatttgagaaaatgacataattcaatgtaat 11596472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 23287401 - 23287336
Alignment:
Q  129 ataataatttgagaaaatgacataattcaatataattccatgtatcagagtc-gtgtcggacactg 193  Q
    ||||||||||  |||||||||||||||||||||||||  |||| |||| ||| |||||||||||||    
T  23287401 ataataatttaggaaaatgacataattcaatataattatatgtgtcagtgtcagtgtcggacactg 23287336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 159
Target Start/End: Original strand, 28296333 - 28296365
Alignment:
Q  127 cgataataatttgagaaaatgacataattcaat 159  Q
    |||||||||||||||||||||||||||||||||    
T  28296333 cgataataatttgagaaaatgacataattcaat 28296365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 165
Target Start/End: Complemental strand, 22423863 - 22423828
Alignment:
Q  130 taataatttgagaaaatgacataattcaatataatt 165  Q
    ||||||||||||||||| ||||||||||||||||||    
T  22423863 taataatttgagaaaatcacataattcaatataatt 22423828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 165
Target Start/End: Complemental strand, 38749617 - 38749579
Alignment:
Q  127 cgataataatttgagaaaatgacataattcaatataatt 165  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  38749617 cgataataatttgaaaaaatgacataattcaatgtaatt 38749579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 40211962 - 40212020
Alignment:
Q  128 gataataatttgagaaaatgacataattcaatataattccatgtatcagagtcgtgtcg 186  Q
    |||||||| |||||||||| |||||||||||||||||   ||||||| | |||||||||    
T  40211962 gataataaattgagaaaattacataattcaatataatcatatgtatcggtgtcgtgtcg 40212020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 158
Target Start/End: Complemental strand, 41558735 - 41558706
Alignment:
Q  129 ataataatttgagaaaatgacataattcaa 158  Q
    ||||||||||||||||||||||||||||||    
T  41558735 ataataatttgagaaaatgacataattcaa 41558706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 43208328 - 43208291
Alignment:
Q  127 cgataataatttgagaaaatgacataattcaatataat 164  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  43208328 cgatagtaatttgagaaaatgacataattcaatgtaat 43208291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 155
Target Start/End: Complemental strand, 2577234 - 2577206
Alignment:
Q  127 cgataataatttgagaaaatgacataatt 155  Q
    |||||||||||||||||||||||||||||    
T  2577234 cgataataatttgagaaaatgacataatt 2577206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 16434435 - 16434399
Alignment:
Q  128 gataataatttgagaaaatgacataattcaatataat 164  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  16434435 gataataatttgaaaaaataacataattcaatataat 16434399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 18607150 - 18607114
Alignment:
Q  128 gataataatttgagaaaatgacataattcaatataat 164  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  18607150 gataataatttgagaaaataacataattcaatgtaat 18607114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 155
Target Start/End: Complemental strand, 18919076 - 18919048
Alignment:
Q  127 cgataataatttgagaaaatgacataatt 155  Q
    |||||||||||||||||||||||||||||    
T  18919076 cgataataatttgagaaaatgacataatt 18919048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 159
Target Start/End: Complemental strand, 19737536 - 19737504
Alignment:
Q  127 cgataataatttgagaaaatgacataattcaat 159  Q
    |||||||||||||||||||| ||||||||||||    
T  19737536 cgataataatttgagaaaattacataattcaat 19737504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 37472650 - 37472614
Alignment:
Q  128 gataataatttgagaaaatgacataattcaatataat 164  Q
    |||||||||| |||||||||||||||||| |||||||    
T  37472650 gataataattcgagaaaatgacataattcgatataat 37472614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 41600904 - 41600940
Alignment:
Q  128 gataataatttgagaaaatgacataattcaatataat 164  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  41600904 gataataatttgagaaaattacacaattcaatataat 41600940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 18513295 - 18513231
Alignment:
Q  127 cgataataatttgagaaaatgacataattcaatataattccatgtatcagagtcgtgtcggacac 191  Q
    ||||||||||||||||||||||||||||||||| ||||   |||| |||| || |||||||||||    
T  18513295 cgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgttgtgtcggacac 18513231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 14465348 - 14465311
Alignment:
Q  127 cgataataatttgagaaaatgacataattcaatataat 164  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  14465348 cgataataatttgagaaaatgacataattcaatttaat 14465311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 5654644 - 5654608
Alignment:
Q  128 gataataatttgagaaaatgacataattcaatataat 164  Q
    |||||||||||||||||||||||||||||||| ||||    
T  5654644 gataataatttgagaaaatgacataattcaatgtaat 5654608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 10546154 - 10546190
Alignment:
Q  128 gataataatttgagaaaatgacataattcaatataat 164  Q
    |||||||||||||||||||||||||||||||| ||||    
T  10546154 gataataatttgagaaaatgacataattcaatgtaat 10546190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 159
Target Start/End: Original strand, 43188618 - 43188649
Alignment:
Q  128 gataataatttgagaaaatgacataattcaat 159  Q
    ||||||||||||||||||||||||||||||||    
T  43188618 gataataatttgagaaaatgacataattcaat 43188649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 157
Target Start/End: Original strand, 7012071 - 7012101
Alignment:
Q  127 cgataataatttgagaaaatgacataattca 157  Q
    |||||||||||||||||||||||||||||||    
T  7012071 cgataataatttgagaaaatgacataattca 7012101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 171
Target Start/End: Complemental strand, 11135350 - 11135304
Alignment:
Q  125 atcgataataatttgagaaaatgacataattcaatataattccatgt 171  Q
    |||| ||||| ||||||||||| |||||||||||||||||| |||||    
T  11135350 atcgctaatagtttgagaaaattacataattcaatataattacatgt 11135304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 23915136 - 23915178
Alignment:
Q  129 ataataatttgagaaaatgacataattcaatataattccatgt 171  Q
    ||||| |||||||||||| |||||||||||||||||| |||||    
T  23915136 ataatcatttgagaaaataacataattcaatataattacatgt 23915178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 163
Target Start/End: Complemental strand, 25390938 - 25390904
Alignment:
Q  129 ataataatttgagaaaatgacataattcaatataa 163  Q
    |||||||||| ||||||||||||||||||||||||    
T  25390938 ataataattttagaaaatgacataattcaatataa 25390904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 165
Target Start/End: Complemental strand, 19230362 - 19230325
Alignment:
Q  128 gataataatttgagaaaatgacataattcaatataatt 165  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  19230362 gataataatttgagaaaataacataattcaatgtaatt 19230325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 157
Target Start/End: Complemental strand, 20743331 - 20743302
Alignment:
Q  128 gataataatttgagaaaatgacataattca 157  Q
    ||||||||||||||||||||||||||||||    
T  20743331 gataataatttgagaaaatgacataattca 20743302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 165
Target Start/End: Complemental strand, 26276058 - 26276025
Alignment:
Q  132 ataatttgagaaaatgacataattcaatataatt 165  Q
    |||||||||||||||||||||||||||| |||||    
T  26276058 ataatttgagaaaatgacataattcaatgtaatt 26276025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 157
Target Start/End: Original strand, 32910557 - 32910586
Alignment:
Q  128 gataataatttgagaaaatgacataattca 157  Q
    ||||||||||||||||||||||||||||||    
T  32910557 gataataatttgagaaaatgacataattca 32910586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 34589760 - 34589723
Alignment:
Q  127 cgataataatttgagaaaatgacataattcaatataat 164  Q
    |||||| |||||||||||||||||||||||||| ||||    
T  34589760 cgataacaatttgagaaaatgacataattcaatgtaat 34589723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 158
Target Start/End: Original strand, 48845148 - 48845177
Alignment:
Q  129 ataataatttgagaaaatgacataattcaa 158  Q
    ||||||||||||||||||||||||||||||    
T  48845148 ataataatttgagaaaatgacataattcaa 48845177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 157
Target Start/End: Complemental strand, 31243600 - 31243572
Alignment:
Q  129 ataataatttgagaaaatgacataattca 157  Q
    |||||||||||||||||||||||||||||    
T  31243600 ataataatttgagaaaatgacataattca 31243572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 35952668 - 35952612
Alignment:
Q  130 taataatttgagaaaatgacataattcaatataattccatgtatcagagtcgtgtcg 186  Q
    ||||||||||| ||||| | |||||||||| |||||  ||||||||| |||||||||    
T  35952668 taataatttgataaaatcatataattcaatgtaattatatgtatcagtgtcgtgtcg 35952612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 43300024 - 43299988
Alignment:
Q  128 gataataatttgagaaaatgacataattcaatataat 164  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  43300024 gataataatttgagaaaattacataattcaatgtaat 43299988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 43300622 - 43300658
Alignment:
Q  128 gataataatttgagaaaatgacataattcaatataat 164  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  43300622 gataataatttgagaaaattacataattcaatgtaat 43300658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 44797012 - 44796972
Alignment:
Q  131 aataatttgagaaaatgacataattcaatataattccatgt 171  Q
    |||||||||||||||| |||||||||||| ||||| |||||    
T  44797012 aataatttgagaaaataacataattcaatgtaattacatgt 44796972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 190
Target Start/End: Original strand, 7948963 - 7949027
Alignment:
Q  127 cgataataatttgagaaaa-tgacataattcaatataattccatgtatcagagtcgtgtcggaca 190  Q
    |||||||| |||||||||| |||||||||||||| |||||  |||| ||||||||||||||||||    
T  7948963 cgataatagtttgagaaaaatgacataattcaatgtaattgtatgtgtcagagtcgtgtcggaca 7949027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 159
Target Start/End: Complemental strand, 9210879 - 9210847
Alignment:
Q  127 cgataataatttgagaaaatgacataattcaat 159  Q
    |||||||||||||||||||||||||||||||||    
T  9210879 cgataataatttgagaaaatgacataattcaat 9210847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 157
Target Start/End: Complemental strand, 16789703 - 16789674
Alignment:
Q  128 gataataatttgagaaaatgacataattca 157  Q
    ||||||||||||||||||||||||||||||    
T  16789703 gataataatttgagaaaatgacataattca 16789674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 157
Target Start/End: Original strand, 20691325 - 20691354
Alignment:
Q  128 gataataatttgagaaaatgacataattca 157  Q
    ||||||||||||||||||||||||||||||    
T  20691325 gataataatttgagaaaatgacataattca 20691354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 157
Target Start/End: Original strand, 21149073 - 21149102
Alignment:
Q  128 gataataatttgagaaaatgacataattca 157  Q
    ||||||||||||||||||||||||||||||    
T  21149073 gataataatttgagaaaatgacataattca 21149102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 40150625 - 40150588
Alignment:
Q  127 cgataataatttgagaaaatgacataattcaatataat 164  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  40150625 cgataataatttgagaaaatgatataattcaatgtaat 40150588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 12704710 - 12704674
Alignment:
Q  128 gataataatttgagaaaatgacataattcaatataat 164  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  12704710 gataataatttgaaaaaatgacataattcaatgtaat 12704674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 13807175 - 13807211
Alignment:
Q  128 gataataatttgagaaaatgacataattcaatataat 164  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  13807175 gataacaatttgagaaaatcacataattcaatataat 13807211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 164
Target Start/End: Original strand, 15864259 - 15864287
Alignment:
Q  136 tttgagaaaatgacataattcaatataat 164  Q
    |||||||||||||||||||||||||||||    
T  15864259 tttgagaaaatgacataattcaatataat 15864287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 155
Target Start/End: Original strand, 25074794 - 25074822
Alignment:
Q  127 cgataataatttgagaaaatgacataatt 155  Q
    |||||||||||||||||||||||||||||    
T  25074794 cgataataatttgagaaaatgacataatt 25074822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 25908892 - 25908856
Alignment:
Q  128 gataataatttgagaaaatgacataattcaatataat 164  Q
    |||| |||||||| |||||||||||||||||||||||    
T  25908892 gatagtaatttgaaaaaatgacataattcaatataat 25908856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 165
Target Start/End: Complemental strand, 41319362 - 41319326
Alignment:
Q  129 ataataatttgagaaaatgacataattcaatataatt 165  Q
    |||||||||||| |||||||||||||||||| |||||    
T  41319362 ataataatttgaaaaaatgacataattcaatgtaatt 41319326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 52369781 - 52369817
Alignment:
Q  128 gataataatttgagaaaatgacataattcaatataat 164  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  52369781 gataataatttgagaaaattacataattcaatgtaat 52369817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 165
Target Start/End: Original strand, 40681987 - 40682025
Alignment:
Q  127 cgataataatttgagaaaatgacataattcaatataatt 165  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  40681987 cgataataatttgagaaaatgacataattcaatgtaatt 40682025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 18570977 - 18571014
Alignment:
Q  127 cgataataatttgagaaaatgacataattcaatataat 164  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  18570977 cgataataatttgagaaaatgacataattcaatgtaat 18571014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 159
Target Start/End: Original strand, 30563415 - 30563446
Alignment:
Q  128 gataataatttgagaaaatgacataattcaat 159  Q
    ||||||||||||||||||||||||||||||||    
T  30563415 gataataatttgagaaaatgacataattcaat 30563446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 159
Target Start/End: Original strand, 2073945 - 2073979
Alignment:
Q  125 atcgataataatttgagaaaatgacataattcaat 159  Q
    |||||||||||||||||||||| ||||||||||||    
T  2073945 atcgataataatttgagaaaataacataattcaat 2073979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 157
Target Start/End: Complemental strand, 10535813 - 10535783
Alignment:
Q  127 cgataataatttgagaaaatgacataattca 157  Q
    |||||||||||||||||||||||||||||||    
T  10535813 cgataataatttgagaaaatgacataattca 10535783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 13204035 - 13204093
Alignment:
Q  132 ataatttgagaaaatgacataattcaatataattccatgtatcagagtcgtgtcggaca 190  Q
    ||||||||||||||| |||||||| ||||||| |  |||| |||| |||||||||||||    
T  13204035 ataatttgagaaaattacataatttaatataactatatgtgtcagtgtcgtgtcggaca 13204093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 44605191 - 44605149
Alignment:
Q  129 ataataatttgagaaaatgacataattcaatataattccatgt 171  Q
    |||||||||||||||||| |||||||||||| ||||| |||||    
T  44605191 ataataatttgagaaaataacataattcaatgtaattacatgt 44605149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 16630800 - 16630837
Alignment:
Q  127 cgataataatttgagaaaatgacataattcaatataat 164  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  16630800 cgataataatttaagaaaatgacataattcaatttaat 16630837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 31026700 - 31026737
Alignment:
Q  127 cgataataatttgagaaaatgacataattcaatataat 164  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  31026700 cgataataatttaagaaaatgacataattcaatgtaat 31026737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 165
Target Start/End: Complemental strand, 12933788 - 12933752
Alignment:
Q  129 ataataatttgagaaaatgacataattcaatataatt 165  Q
    |||||||||| |||||||||||||||||||| |||||    
T  12933788 ataataatttaagaaaatgacataattcaatgtaatt 12933752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 2525898 - 2525861
Alignment:
Q  127 cgataataatttgagaaaatgacataattcaatataat 164  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  2525898 cgataataatttgagcaaatgacataattcaatataat 2525861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 35238238 - 35238201
Alignment:
Q  127 cgataataatttgagaaaatgacataattcaatataat 164  Q
    |||||||| |||||||||||||||||||||||||||||    
T  35238238 cgataatattttgagaaaatgacataattcaatataat 35238201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 38134460 - 38134423
Alignment:
Q  127 cgataataatttgagaaaatgacataattcaatataat 164  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  38134460 cgataataatttgagaaaatgacataattcaatgtaat 38134423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 44172943 - 44172907
Alignment:
Q  128 gataataatttgagaaaatgacataattcaatataat 164  Q
    |||||||||||||||||||||||||||||||| ||||    
T  44172943 gataataatttgagaaaatgacataattcaatgtaat 44172907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 185
Target Start/End: Complemental strand, 12843225 - 12843171
Alignment:
Q  131 aataatttgagaaaatgacataattcaatataattccatgtatcagagtcgtgtc 185  Q
    |||||||||| ||||| |||||||||||| ||||| ||||| |||| ||||||||    
T  12843225 aataatttgataaaattacataattcaatgtaattacatgtgtcagtgtcgtgtc 12843171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 163
Target Start/End: Complemental strand, 41099793 - 41099759
Alignment:
Q  129 ataataatttgagaaaatgacataattcaatataa 163  Q
    |||||||||||||||||||| ||||||||||||||    
T  41099793 ataataatttgagaaaatgatataattcaatataa 41099759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 193
Target Start/End: Original strand, 5548686 - 5548747
Alignment:
Q  132 ataatttgagaaaatgacataattcaatataattccatgtatcagagtcgtgtcggacactg 193  Q
    ||||||||||||||| | |||||||| | |||||  |||| |||| ||||||||||||||||    
T  5548686 ataatttgagaaaatcaaataattcagtgtaattatatgtgtcagtgtcgtgtcggacactg 5548747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 164
Target Start/End: Original strand, 18678157 - 18678190
Alignment:
Q  131 aataatttgagaaaatgacataattcaatataat 164  Q
    |||| |||||||||||||||||||||||||||||    
T  18678157 aatattttgagaaaatgacataattcaatataat 18678190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 32308128 - 32308185
Alignment:
Q  130 taataatttgagaaaatgacataattcaatataattccatgtatcagagtcgtgtcgg 187  Q
    ||||||||||||||||| |||||||||| | |||||  |||| |||| ||||||||||    
T  32308128 taataatttgagaaaatcacataattcagtgtaattgtatgtgtcagtgtcgtgtcgg 32308185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 21247789 - 21247753
Alignment:
Q  128 gataataatttgagaaaatgacataattcaatataat 164  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  21247789 gataataatttgagaaaatgacgtaattcaatgtaat 21247753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 165
Target Start/End: Complemental strand, 40747826 - 40747789
Alignment:
Q  128 gataataatttgagaaaatgacataattcaatataatt 165  Q
    |||||||||||||||||||||||||||||||| |||||    
T  40747826 gataataatttgagaaaatgacataattcaatgtaatt 40747789  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 11571591 - 11571627
Alignment:
Q  128 gataataatttgagaaaatgacataattcaatataat 164  Q
    |||||||||||||||||||||||||||||||| ||||    
T  11571591 gataataatttgagaaaatgacataattcaatgtaat 11571627  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 165
Target Start/End: Original strand, 1262892 - 1262927
Alignment:
Q  130 taataatttgagaaaatgacataattcaatataatt 165  Q
    ||||||||||||||||| ||||||||||||||||||    
T  1262892 taataatttgagaaaatcacataattcaatataatt 1262927  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 164
Target Start/End: Original strand, 3921674 - 3921709
Alignment:
Q  129 ataataatttgagaaaatgacataattcaatataat 164  Q
    ||||||||||||||||||||||||||||||| ||||    
T  3921674 ataataatttgagaaaatgacataattcaatgtaat 3921709  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 157
Target Start/End: Original strand, 42325565 - 42325595
Alignment:
Q  127 cgataataatttgagaaaatgacataattca 157  Q
    |||||||||||||||||||||||||||||||    
T  42325565 cgataataatttgagaaaatgacataattca 42325595  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 162
Target Start/End: Complemental strand, 48785317 - 48785283
Alignment:
Q  128 gataataatttgagaaaatgacataattcaatata 162  Q
    ||||||||||||||||||| |||||||||||||||    
T  48785317 gataataatttgagaaaataacataattcaatata 48785283  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 34712434 - 34712373
Alignment:
Q  130 taataatttgagaaaatgacataattcaatataattccatgtatcagagtcgtgtcggacac 191  Q
    ||||||||||||||||| |||||||| | | |||||  |||| |||| ||||||||||||||    
T  34712434 taataatttgagaaaataacataatttagtgtaattatatgtgtcagtgtcgtgtcggacac 34712373  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 2445880 - 2445912
Alignment:
Q  132 ataatttgagaaaatgacataattcaatataat 164  Q
    |||||||||||||||||||||||||||| ||||    
T  2445880 ataatttgagaaaatgacataattcaatttaat 2445912  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 159
Target Start/End: Complemental strand, 11412822 - 11412790
Alignment:
Q  127 cgataataatttgagaaaatgacataattcaat 159  Q
    |||||||||| ||||||||||||||||||||||    
T  11412822 cgataataatatgagaaaatgacataattcaat 11412790  T

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Target: scaffold0037 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 102908 - 102948
Alignment:
Q  125 atcgataataatttgagaaaatgacataattcaatataatt 165  Q
    |||||||||||||||||||||||| |||||||||| |||||    
T  102908 atcgataataatttgagaaaatgatataattcaatgtaatt 102948  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 30068081 - 30068045
Alignment:
Q  128 gataataatttgagaaaatgacataattcaatataat 164  Q
    |||||||||||||||||||||||||||||| ||||||    
T  30068081 gataataatttgagaaaatgacataattcagtataat 30068045  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 165
Target Start/End: Complemental strand, 34201098 - 34201062
Alignment:
Q  129 ataataatttgagaaaatgacataattcaatataatt 165  Q
    ||||||||||||||||||||||||||||||| |||||    
T  34201098 ataataatttgagaaaatgacataattcaatgtaatt 34201062  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 165
Target Start/End: Complemental strand, 8798882 - 8798847
Alignment:
Q  130 taataatttgagaaaatgacataattcaatataatt 165  Q
    ||||||||||||||||| ||||||||||||||||||    
T  8798882 taataatttgagaaaataacataattcaatataatt 8798847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 164
Target Start/End: Original strand, 9936817 - 9936856
Alignment:
Q  125 atcgataataatttgagaaaatgacataattcaatataat 164  Q
    |||||||||||||| ||||||||| |||||||||||||||    
T  9936817 atcgataataatttaagaaaatgatataattcaatataat 9936856  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 162
Target Start/End: Complemental strand, 14230098 - 14230063
Alignment:
Q  127 cgataataatttgagaaaatgacataattcaatata 162  Q
    ||||||| ||||||||||||||||||||||||||||    
T  14230098 cgataatcatttgagaaaatgacataattcaatata 14230063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 164
Target Start/End: Complemental strand, 29198530 - 29198496
Alignment:
Q  130 taataatttgagaaaatgacataattcaatataat 164  Q
    |||||||||||||||||||||||||||||| ||||    
T  29198530 taataatttgagaaaatgacataattcaatgtaat 29198496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 159
Target Start/End: Complemental strand, 34739117 - 34739083
Alignment:
Q  125 atcgataataatttgagaaaatgacataattcaat 159  Q
    |||||||||||| ||||||||||||||||||||||    
T  34739117 atcgataataatatgagaaaatgacataattcaat 34739083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 160
Target Start/End: Complemental strand, 4114257 - 4114224
Alignment:
Q  127 cgataataatttgagaaaatgacataattcaata 160  Q
    ||||||||||||||||||||||||||||| ||||    
T  4114257 cgataataatttgagaaaatgacataattgaata 4114224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 22651984 - 22652041
Alignment:
Q  130 taataatttgagaaaatgacataattcaatataattccatgtatcagagtcgtgtcgg 187  Q
    ||||||||||| ||||| |||||||||||||||||| || || || | ||||||||||    
T  22651984 taataatttgaaaaaatcacataattcaatataattacaagtgtcggtgtcgtgtcgg 22652041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 3508058 - 3508094
Alignment:
Q  128 gataataatttgagaaaatgacataattcaatataat 164  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  3508058 gataataatttgagaaaataacataattcaatgtaat 3508094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 10441213 - 10441245
Alignment:
Q  132 ataatttgagaaaatgacataattcaatataat 164  Q
    |||||||||||||||||||||||||||| ||||    
T  10441213 ataatttgagaaaatgacataattcaatgtaat 10441245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 157
Target Start/End: Complemental strand, 28883930 - 28883902
Alignment:
Q  129 ataataatttgagaaaatgacataattca 157  Q
    |||||||||||||||||||||||||||||    
T  28883930 ataataatttgagaaaatgacataattca 28883902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 157
Target Start/End: Original strand, 40063958 - 40063986
Alignment:
Q  129 ataataatttgagaaaatgacataattca 157  Q
    |||||||||||||||||||||||||||||    
T  40063958 ataataatttgagaaaatgacataattca 40063986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 159
Target Start/End: Original strand, 7696 - 7727
Alignment:
Q  128 gataataatttgagaaaatgacataattcaat 159  Q
    ||||||||||||||||||||||||||||||||    
T  7696 gataataatttgagaaaatgacataattcaat 7727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 157
Target Start/End: Complemental strand, 8106 - 8077
Alignment:
Q  128 gataataatttgagaaaatgacataattca 157  Q
    ||||||||||||||||||||||||||||||    
T  8106 gataataatttgagaaaatgacataattca 8077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 165
Target Start/End: Complemental strand, 225321 - 225284
Alignment:
Q  128 gataataatttgagaaaatgacataattcaatataatt 165  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  225321 gataataatttgagaaaatgacataatacaatgtaatt 225284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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