View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0758_low_66 (Length: 230)
Name: NF0758_low_66
Description: NF0758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0758_low_66 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 12950515 - 12950304
Alignment:
| Q |
19 |
gaggtaggagtaggttgtgctgattttggtgagtttcctacgcaacggttgttaagtaccgttgcaaggaaaatacggtagttaaccatcgttggtttaa |
118 |
Q |
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| T |
12950515 |
gaggtaggagtaggttgtgctggttttggtaagtttcctacgcaacggttgttaagtaccgttgcaaggaaaatacggtagttaaccatcgttggtttaa |
12950416 |
T |
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| Q |
119 |
gcaaatggaaattaacgaccgttgcaaaggccaactggcaattaggtatcgttgggttatatatttaattttcaggtgtgcttgagcaatttttgatgtg |
218 |
Q |
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| T |
12950415 |
gcgaatggaaattaacgaccgttgcaaaggccaaatggcaattaggtatcgttgggttatatatttaattttcaggtgtgcttgagcaatttttgaagtg |
12950316 |
T |
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| Q |
219 |
ggaaaaacaatt |
230 |
Q |
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| T |
12950315 |
ggaaaaacaatt |
12950304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 12901441 - 12901230
Alignment:
| Q |
19 |
gaggtaggagtaggttgtgctgattttggtgagtttcctacgcaacggttgttaagtaccgttgcaaggaaaatacggtagttaaccatcgttggtttaa |
118 |
Q |
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| T |
12901441 |
gaggtaggagtaggttgtgctggttttggtaagtttccagcgcaacggttgttaagtaccattgcaaggaaaatacggtagttaaccatcgttgctttaa |
12901342 |
T |
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| Q |
119 |
gcaaatggaaattaacgaccgttgcaaaggccaactggcaattaggtatcgttgggttatatatttaattttcaggtgtgcttgagcaatttttgatgtg |
218 |
Q |
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| T |
12901341 |
gtgaatggcaactaacaactgttgcaaagaccgaaccgcaattatctatcgttggattacatatttaattttcaggtgtgtttgagcaatttttgaagtg |
12901242 |
T |
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| Q |
219 |
ggaaaaacaatt |
230 |
Q |
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| T |
12901241 |
ggaaaaacaatt |
12901230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 31392314 - 31392233
Alignment:
| Q |
19 |
gaggtaggagtaggttgtgctgattttggtgagtttcctacgcaacggttgttaagtaccgttgcaaggaaaatacggtagt |
100 |
Q |
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||||||||||||||||||| || | |||| ||||||| ||||| ||||||| |||||||||| | ||||||||||||||| |
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| T |
31392314 |
gaggtaggagtaggttgtgttggtcttgggaagtttccagcgcaatggttgttgagtaccgttgtagggaaaatacggtagt |
31392233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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