View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0758_low_76 (Length: 204)
Name: NF0758_low_76
Description: NF0758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0758_low_76 |
 | |
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| [»] chr2 (3 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
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|
| [»] chr4 (2 HSPs) |
| |
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| [»] scaffold0436 (1 HSPs) |
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|
| [»] scaffold0149 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0064 (1 HSPs) |
| | |
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| [»] chr7 (3 HSPs) |
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| [»] scaffold0670 (1 HSPs) |
| | |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 5e-98; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 4 - 204
Target Start/End: Complemental strand, 23844879 - 23844679
Alignment:
| Q |
4 |
aggataggtaggttaaatgaacgaataagatgaaggatgaagtgtgttactaggagtaaaagatgtagagaatgaaaattaaactaatggcgggtgtaag |
103 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
23844879 |
aggataggtgggttaaatgaacgaataagatgaaggatgaagtgtgtcactaggagtaaaagatgtagagaatgaaaattaaactaatggtgggtgtaag |
23844780 |
T |
|
| Q |
104 |
atttagatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgatgtaagatgatg |
203 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
23844779 |
atttagatatgatgtaaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgacgtaagatgatg |
23844680 |
T |
|
| Q |
204 |
a |
204 |
Q |
| |
|
| |
|
|
| T |
23844679 |
a |
23844679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 4 - 204
Target Start/End: Original strand, 23210788 - 23210988
Alignment:
| Q |
4 |
aggataggtaggttaaatgaacgaataagatgaaggatgaagtgtgttactaggagtaaaagatgtagagaatgaaaattaaactaatggcgggtgtaag |
103 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| | |||||||||||||||||||||||| ||||||||| |
|
|
| T |
23210788 |
aggataggtgggttaaatgaacgaataagatgaaggatgaagtgtgtcacaaggagtaaaagaagaagagaatgaaaattaaactaatggtgggtgtaag |
23210887 |
T |
|
| Q |
104 |
atttagatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgatgtaagatgatg |
203 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
23210888 |
atttagatgtgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgacgtaagatgatg |
23210987 |
T |
|
| Q |
204 |
a |
204 |
Q |
| |
|
| |
|
|
| T |
23210988 |
a |
23210988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 6 - 204
Target Start/End: Original strand, 24431473 - 24431671
Alignment:
| Q |
6 |
gataggtaggttaaatgaacgaataagatgaaggatgaagtgtgttactaggagtaaaagatgtagagaatgaaaattaaactaatggcgggtgtaagat |
105 |
Q |
| |
|
||||||| |||||| |||||| ||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
24431473 |
gataggtgggttaagtgaacggataagatgaaggatgaaatatgtcactaggagtaaaagatgtagagaatgaaaattaaactaatggtgggtgtaagaa |
24431572 |
T |
|
| Q |
106 |
ttagatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgatgtaagatgatga |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
24431573 |
ttagatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgacataagatgatga |
24431671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 4 - 204
Target Start/End: Complemental strand, 32410584 - 32410384
Alignment:
| Q |
4 |
aggataggtaggttaaatgaacgaataagatgaaggatgaagtgtgttactaggagtaaaagatgtagagaatgaaaattaaactaatggcgggtgtaag |
103 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
32410584 |
aggataggtgggttaaatgaacgaataagatgaaggatgaagtgtgccaccaggagtaaaagatgcagagaatgaaaattaaactaatggtgggtgtaag |
32410485 |
T |
|
| Q |
104 |
atttagatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgatgtaagatgatg |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
32410484 |
atttagatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgacgtaagatgatg |
32410385 |
T |
|
| Q |
204 |
a |
204 |
Q |
| |
|
| |
|
|
| T |
32410384 |
a |
32410384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 4 - 204
Target Start/End: Original strand, 23844883 - 23845083
Alignment:
| Q |
4 |
aggataggtaggttaaatgaacgaataagatgaaggatgaagtgtgttactaggagtaaaagatgtagagaatgaaaattaaactaatggcgggtgtaag |
103 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
23844883 |
aggataggtgggttaaatgaacggataagatgaaggatgaagtgtgtcagtgggagtaaaagatgtagagaatgaaaattaaactaatggtgggtgtaag |
23844982 |
T |
|
| Q |
104 |
atttagatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgatgtaagatgatg |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
23844983 |
atttagatatgatgtgaatatgacaaaattatgagttagacataggtagacgaatatatggtgtaaaataattatgagttgctaatgacgtaagatgatg |
23845082 |
T |
|
| Q |
204 |
a |
204 |
Q |
| |
|
| |
|
|
| T |
23845083 |
a |
23845083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 118 - 204
Target Start/End: Original strand, 18544653 - 18544739
Alignment:
| Q |
118 |
tgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgatgtaagatgatga |
204 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||| |||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
18544653 |
tgaatatgacaaaattatgagttagtcataagtagacaaatatatgatgtaaattaatgatgagttgctaatgacgtaagatgatga |
18544739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0436 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: scaffold0436
Description:
Target: scaffold0436; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 4 - 204
Target Start/End: Original strand, 878 - 1078
Alignment:
| Q |
4 |
aggataggtaggttaaatgaacgaataagatgaaggatgaagtgtgttactaggagtaaaagatgtagagaatgaaaattaaactaatggcgggtgtaag |
103 |
Q |
| |
|
||||||||| ||||||| ||||| ||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||| ||||||||| |
|
|
| T |
878 |
aggataggtgggttaaaagaacggataagatgaaggatgaagtgtgtcactaggagtaaaagacgcagagaatgaaaattaaactaatggtgggtgtaag |
977 |
T |
|
| Q |
104 |
atttagatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgatgtaagatgatg |
203 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
978 |
atttatatatgatgtgaatatgccaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagtcgctaatgacgtaagatgatg |
1077 |
T |
|
| Q |
204 |
a |
204 |
Q |
| |
|
| |
|
|
| T |
1078 |
a |
1078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0149 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: scaffold0149
Description:
Target: scaffold0149; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 4 - 204
Target Start/End: Original strand, 36713 - 36913
Alignment:
| Q |
4 |
aggataggtaggttaaatgaacgaataagatgaaggatgaagtgtgttactaggagtaaaagatgtagagaatgaaaattaaactaatggcgggtgtaag |
103 |
Q |
| |
|
|||||||||||||| |||| | | ||||||||||||||||||| ||| |||| |||||||| ||| ||||||||||||| |||||||||| ||||||||| |
|
|
| T |
36713 |
aggataggtaggtttaatgcatggataagatgaaggatgaagtatgtcactatgagtaaaatatgcagagaatgaaaatcaaactaatggtgggtgtaag |
36812 |
T |
|
| Q |
104 |
atttagatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgatgtaagatgatg |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36813 |
atttagatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgatgtaagatgatg |
36912 |
T |
|
| Q |
204 |
a |
204 |
Q |
| |
|
| |
|
|
| T |
36913 |
a |
36913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 4 - 204
Target Start/End: Complemental strand, 24495462 - 24495262
Alignment:
| Q |
4 |
aggataggtaggttaaatgaacgaataagatgaaggatgaagtgtgttactaggagtaaaagatgtagagaatgaaaattaaactaatggcgggtgtaag |
103 |
Q |
| |
|
|||||||||||||| |||| | | ||||||||||||||||||| ||| ||||||||||||||||| |||||||||||| |||||||||| ||||||||| |
|
|
| T |
24495462 |
aggataggtaggtttaatgcatggataagatgaaggatgaagtatgtcactaggagtaaaagatgctgagaatgaaaatcaaactaatggtgggtgtaag |
24495363 |
T |
|
| Q |
104 |
atttagatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgatgtaagatgatg |
203 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24495362 |
atttaaatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgatgtaagatgatg |
24495263 |
T |
|
| Q |
204 |
a |
204 |
Q |
| |
|
| |
|
|
| T |
24495262 |
a |
24495262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 4 - 204
Target Start/End: Complemental strand, 23450349 - 23450148
Alignment:
| Q |
4 |
aggataggtaggttaaatgaacgaataagatgaaggatgaagtgtgttactaggagtaaaagatgtagagaatgaaaattaaactaatggcgggtgtaag |
103 |
Q |
| |
|
||||||||| ||||||||| ||| ||||||||||||||||||| ||| |||| |||||||| ||| | |||||||||||||||||||||| ||||||||| |
|
|
| T |
23450349 |
aggataggtgggttaaatggacggataagatgaaggatgaagtatgtcactaagagtaaaaaatgcaaagaatgaaaattaaactaatggtgggtgtaag |
23450250 |
T |
|
| Q |
104 |
atttagatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgt-aaaataatgatgagttgctaatgatgtaagatgat |
202 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
23450249 |
atttagatatgacgtgaatatgacaaaattaagagttagacataagtagacgaatatatggtgtaaaaataatgatgagttgctaatgacgtaagatgat |
23450150 |
T |
|
| Q |
203 |
ga |
204 |
Q |
| |
|
|| |
|
|
| T |
23450149 |
ga |
23450148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 154; Significance: 7e-82; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 15 - 204
Target Start/End: Complemental strand, 12057070 - 12056882
Alignment:
| Q |
15 |
gttaaatgaacgaataagatgaaggatgaagtgtgttactaggagtaaaagatgtagagaatgaaaattaaactaatggcgggtgtaagatttagatatg |
114 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
12057070 |
gttaaatgaacggatatgatgaaggatgaagtgtgtcactaggagtaaaagatgtagagaatgaaaattaaactaatggtgggtgtaagatttagatat- |
12056972 |
T |
|
| Q |
115 |
atgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgatgtaagatgatga |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
12056971 |
atgtgaatatgacaaaattatgagttagacataagtagacaaatatatggtgtaaaataatgatgaattgctaatgacgtaagatgatga |
12056882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 123 - 204
Target Start/End: Complemental strand, 13296298 - 13296217
Alignment:
| Q |
123 |
atgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgatgtaagatgatga |
204 |
Q |
| |
|
||||||| || |||| |||||| |||||||||||||||||||||||| | |||||||||||||||||| ||||||| |||| |
|
|
| T |
13296298 |
atgacaagatgatgacttagacttaagtagacgaatatatggtgtaagttgatgatgagttgctaatgacgtaagataatga |
13296217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 6 - 202
Target Start/End: Original strand, 12190 - 12386
Alignment:
| Q |
6 |
gataggtaggttaaatgaacgaataagatgaaggatgaagtgtgttactaggagtaaaagatgtagagaatgaaaattaaactaatggcgggtgtaagat |
105 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||| | ||| |
|
|
| T |
12190 |
gataggtgggttaaatgaacggataagatgaaggatgaagtgtgtcactaggagtaaaagatgtagagaatgaaaactaaactaatggtgggtgaacgat |
12289 |
T |
|
| Q |
106 |
ttagatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgatgtaagatgat |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
12290 |
ttagatatgatgtgaatatgacaaaattatgagttagaaatgagtagacgaatatatggtataaaataatgatgagtttctaatgacgtaagatgat |
12386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 119; Significance: 5e-61; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 43 - 204
Target Start/End: Complemental strand, 16478335 - 16478176
Alignment:
| Q |
43 |
aagtgtgttactaggagtaaaagatgtagagaatgaaaattaaactaatggcgggtgtaagatttagatatgatgtgaatatgacaaaattatgagttag |
142 |
Q |
| |
|
|||| ||| ||||||||||||| ||| |||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
16478335 |
aagtatgtcactaggagtaaaatatgcagagaatgaaaattgaactaatggtgggtgtaagatttagatatgatgttaatatgacaa--ttatgagttag |
16478238 |
T |
|
| Q |
143 |
acataagtagacgaatatatggtgtaaaataatgatgagttgctaatgatgtaagatgatga |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
16478237 |
acataagtagacgaatatatggtgtaaaataatgatgagttgctaatgacgtaagatgatga |
16478176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 123 - 204
Target Start/End: Original strand, 42516 - 42597
Alignment:
| Q |
123 |
atgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgatgtaagatgatga |
204 |
Q |
| |
|
||||||| || |||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||| |
|
|
| T |
42516 |
atgacaagatgatgacttagacttaagtagacgaatatatggtgtaaattaatgatgagttgctaatgacgtaagataatga |
42597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 16481284 - 16481242
Alignment:
| Q |
4 |
aggataggtaggttaaatgaacgaataagatgaaggatgaagt |
46 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
16481284 |
aggataggtgggttaaatgaacggataagatgaaggatgaagt |
16481242 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0670 (Bit Score: 62; Significance: 5e-27; HSPs: 1)
Name: scaffold0670
Description:
Target: scaffold0670; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 118 - 191
Target Start/End: Complemental strand, 5774 - 5701
Alignment:
| Q |
118 |
tgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatga |
191 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
5774 |
tgaacatgacaaaattatgagttagacataagtagacgaatatatggtgtaaattaatgaagagttgctaatga |
5701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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