View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0759_high_1 (Length: 644)
Name: NF0759_high_1
Description: NF0759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0759_high_1 |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0036 (1 HSPs) |
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| [»] scaffold0028 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0435 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 501; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 101 - 644
Target Start/End: Complemental strand, 13936133 - 13935589
Alignment:
| Q |
101 |
atcatcatctctttaatgttgacaagttttgagatgatatcttccatcattttttctttctgagcctccttgcgatcgtatggtgaaaaagctgatgaag |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13936133 |
atcatcatctctttaatgttgacaggttttgagatgatatcttccagcattttttctttctgagcctccttgcgatcgtatggtgaaaaagctgatgaag |
13936034 |
T |
|
| Q |
201 |
atgatttgagtcgtttggcaggattttgagtttgcatgttggaatctggttcattatcaaggttaatgtatgaaactttagagggttttgagcttagcct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13936033 |
atgatttgagtcgtttggcaggattttgagtttgcatgttggaatctggttcattatcaaggttaatgtatgaaactttagagggttttgagcttagcct |
13935934 |
T |
|
| Q |
301 |
aatggattt-ctaagatcatttgagaaggaccgtttggattgttcgtttggtttaaaaagctcatcgaacgttttaactttcactggagctgaagtggtg |
399 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
13935933 |
aatggattttctaagatcatttgagaaggaccgtttggattgttcgtttggtttaaaaagctcatcgaacgtttcaactttcactggagctgaagtggtg |
13935834 |
T |
|
| Q |
400 |
aagctttttggtggcgaagaagagtaaaggtcagtttgtgaatctagaatgatgattgattcaagaacgtaggtgaaggaagctcgaggggtgggtggag |
499 |
Q |
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| T |
13935833 |
aaacattttggtggtgaagaagagtaaaggtcagtttgtgaatctggaatgatgattgattcaagaacgtaggtgaaggaagctggaggggtgggtggag |
13935734 |
T |
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| Q |
500 |
gtgattgacgaggagaagaaggagaggtttggtcaacagagagaagaagttcagagaaggtttgtttttagttttccatttttgatttggttctgagaat |
599 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13935733 |
gtgattgacgaggagaagaaggaaaggtttggtcaacagagagaagaagttcagagaaggtttgtttttagttttccatttttgatttggttctgagaat |
13935634 |
T |
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| Q |
600 |
agggtgaatgactatggaggaagggagttttatggtgaagaagaa |
644 |
Q |
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| T |
13935633 |
agggtgaatgactatggaggaagggagttttatggtgaagaagaa |
13935589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 547 - 644
Target Start/End: Complemental strand, 612812 - 612721
Alignment:
| Q |
547 |
agttcagagaaggtttgtttttagttttccatttttgatttggttctgagaatagggtgaatgactatggaggaagggagttttatggtgaagaagaa |
644 |
Q |
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||||||||||||||||||||| | |||||||||||||||| |||| |||| |||||||||||||| ||| | ||||||||||||| |||||| |
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| T |
612812 |
agttcagagaaggtttgttttgatttttccatttttgatt------tgaggatagaatgaatgactatggaagaatgaagttttatggtgaggaagaa |
612721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 250; Significance: 1e-138; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 108 - 456
Target Start/End: Original strand, 101727 - 102076
Alignment:
| Q |
108 |
tctctttaatgttgacaagttttgagatgatatcttccatcattttttctttctgagcctccttgcgatcgtatggtgaaaaagctgatgaagatgattt |
207 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||| ||| |
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| T |
101727 |
tctctttaatgttgacaagttttgagataatatcttccatcatcttttctttctgagcctccttgcgatcatatggtgaaaaagctgatgaggatgtttt |
101826 |
T |
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| Q |
208 |
gagtcgtttggcaggattttgagtttgcatgttggaatctggttcattatcaaggttaatgtatgaaactttagagggttttgagcttagcctaatgga- |
306 |
Q |
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||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||| |
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| T |
101827 |
gagtcgtttggtaggattttgagcttgcatgttggaatctggttcattatcaaggttattgtatgaagttttagagggttttgagcttagcctgatggat |
101926 |
T |
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| Q |
307 |
tttctaagatcatttgagaaggaccgtttggattgttcgtttggtttaaaaagctcatcgaacgttttaactttcactggagctgaagtggtgaagcttt |
406 |
Q |
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||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||| | |||||||| | ||||||||||||||||||| |
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| T |
101927 |
tttctaagatcatttgagaaggaccgtttggattgatcatttggtttaaaaagttcatcgaacgtttcagctttcactagtgctgaagtggtgaagcttt |
102026 |
T |
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| Q |
407 |
ttggtggcgaagaagagtaaaggtcagtttgtgaatctagaatgatgatt |
456 |
Q |
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||||||| ||| |||||||| || |||||||||||||| ||||||||||| |
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| T |
102027 |
ttggtggtgaacaagagtaagggccagtttgtgaatctggaatgatgatt |
102076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 113 - 309
Target Start/End: Complemental strand, 21757274 - 21757078
Alignment:
| Q |
113 |
ttaatgttgacaagttttgagatgatatcttccatcattttttctttctgagcctccttgcgatcgtatggtgaaaaagctgatgaagatgatttgagtc |
212 |
Q |
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|||||||| ||| |||||||| ||||||||||| ||||||||| |||| ||| |||||||||||||| ||||||||||||||||| ||| |||||||| |
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| T |
21757274 |
ttaatgttaacagattttgagacgatatcttccagcattttttccttcttagcttccttgcgatcgtacggtgaaaaagctgatgaggattgtttgagtc |
21757175 |
T |
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| Q |
213 |
gtttggcaggattttgagtttgcatgttggaatctggttcattatcaaggttaatgtatgaaactttagagggttttgagcttagcctaatggattt |
309 |
Q |
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|||||||||| ||||||| ||| || |||||| | |||||| ||||||| |||||| || ||||| |||||||| ||| || ||||||||||| |
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| T |
21757174 |
gtttggcagggttttgagcttgtataaaggaatcagattcattctcaaggtcaatgtaagagactttcgagggtttagaggagagtctaatggattt |
21757078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 547 - 644
Target Start/End: Original strand, 24820962 - 24821053
Alignment:
| Q |
547 |
agttcagagaaggtttgtttttagttttccatttttgatttggttctgagaatagggtgaatgactatggaggaagggagttttatggtgaagaagaa |
644 |
Q |
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||||||||||||||||||||| | |||||||||||||||| |||| |||| |||||||||||||| ||| | ||||||||||||| |||||| |
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| T |
24820962 |
agttcagagaaggtttgttttgatttttccatttttgatt------tgaggatagaatgaatgactatggaagaatgaagttttatggtgaggaagaa |
24821053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 113 - 230
Target Start/End: Complemental strand, 109187 - 109070
Alignment:
| Q |
113 |
ttaatgttgacaagttttgagatgatatcttccatcattttttctttctgagcctccttgcgatcgtatggtgaaaaagctgatgaagatgatttgagtc |
212 |
Q |
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|||||||| ||| ||| |||| ||||||||||| ||||||||| |||| ||| ||||||||||||||||||||||||||| |||| || |||||||| |
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| T |
109187 |
ttaatgttaacagatttagagacgatatcttccagcattttttccttcttagcttccttgcgatcgtatggtgaaaaagctaatgagtattgtttgagtc |
109088 |
T |
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| Q |
213 |
gtttggcaggattttgag |
230 |
Q |
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||||||| || ||||||| |
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| T |
109087 |
gtttggctgggttttgag |
109070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 547 - 644
Target Start/End: Original strand, 722474 - 722565
Alignment:
| Q |
547 |
agttcagagaaggtttgtttttagttttccatttttgatttggttctgagaatagggtgaatgactatggaggaagggagttttatggtgaagaagaa |
644 |
Q |
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||||||||||||||||||||| | |||||||||||||||| |||| |||| |||||||||||||| ||| | ||||||||||||| |||||| |
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| T |
722474 |
agttcagagaaggtttgttttgatttttccatttttgatt------tgaggatagaatgaatgactatggaagaatgaagttttatggtgaggaagaa |
722565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 547 - 644
Target Start/End: Complemental strand, 118229 - 118138
Alignment:
| Q |
547 |
agttcagagaaggtttgtttttagttttccatttttgatttggttctgagaatagggtgaatgactatggaggaagggagttttatggtgaagaagaa |
644 |
Q |
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||||||||||||||||||||| | |||||||||||||||| |||| |||| |||||||||||||| ||| | ||||||||||||| |||||| |
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| T |
118229 |
agttcagagaaggtttgttttgatttttccatttttgatt------tgaggatagaatgaatgactatggaagaatgaagttttatggtgaggaagaa |
118138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0435 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0435
Description:
Target: scaffold0435; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 238
Target Start/End: Complemental strand, 404 - 342
Alignment:
| Q |
173 |
cgatcgtatggtgaaaaagctgatgaagatgatttgagtcgtttggcaggattttgagtttgcatg |
238 |
Q |
| |
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|||||||| |||||||||||||||||| |||||||||||||| | |||||||||| ||||||| |
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| T |
404 |
cgatcgtacggtgaaaaagctgatgaa---gatttgagtcgttttgtaggattttgatcttgcatg |
342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 583
Target Start/End: Complemental strand, 9000929 - 9000889
Alignment:
| Q |
543 |
aagaagttcagagaaggtttgtttttagttttccatttttg |
583 |
Q |
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||||||||||||||||||||||||| ||||||||||||| |
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| T |
9000929 |
aagaagttcagagaaggtttgttttggattttccatttttg |
9000889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 583
Target Start/End: Complemental strand, 9010094 - 9010054
Alignment:
| Q |
543 |
aagaagttcagagaaggtttgtttttagttttccatttttg |
583 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||| |
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| T |
9010094 |
aagaagttcagagaaggtttgttttggattttccatttttg |
9010054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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