View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0759_high_15 (Length: 393)
Name: NF0759_high_15
Description: NF0759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0759_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 21 - 388
Target Start/End: Original strand, 16978890 - 16979255
Alignment:
| Q |
21 |
acatcatcaatgacagtatctaaggtaagagacttgttgtagcatttcactcttcagacttacacattctgaatacttaaaccaaacaaacattatagca |
120 |
Q |
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| T |
16978890 |
acatcatcaatgacagtatctaaggtaagagacttgttgtagcatttcactcttcagacttacacattctgaatacttaaaccaaacaaacattatagca |
16978989 |
T |
|
| Q |
121 |
taaccattaaacttttgaagggatgctcttcatattttgtggaacatttcagcataaaatttcaaaattatatatagacattaatgttaatcttaaactt |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
16978990 |
taaccattaaacttttgaagggatgctcttcatattttgtggaacatttcagcataaaatttcaaaattatatcaagacattaatgttaatcttaaactt |
16979089 |
T |
|
| Q |
221 |
acaccatcacaagtttgttagacatgtattgtctagataaatgaatatcctctcttttcttacaataatcaagtagtttaaattctgatatagnnnnnnn |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
16979090 |
acaccatcacaagtttgttagacatgtattgtctagataaatgaatatcctctcttttcttacaataatcaagtagtttaaagtctgatata--agtttt |
16979187 |
T |
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| Q |
321 |
nnataactatatacaataatacacttgagcaaacagtttttgaagggatattccaggttcatctcact |
388 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
16979188 |
ttataactatatacaataatacacttgagcaaactgtttttgaagggatattccaggttcttctcact |
16979255 |
T |
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