View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0759_high_16 (Length: 378)
Name: NF0759_high_16
Description: NF0759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0759_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 7 - 334
Target Start/End: Complemental strand, 41959994 - 41959663
Alignment:
| Q |
7 |
ggagcagagattgttgagtgtgcatgtgtaattgaattaccagaattaaaggtatgatataactagaagtatctcattcaatatttgttcactaacataa |
106 |
Q |
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| T |
41959994 |
ggagcagagattgttgagtgtgcatgtgtaattgaattaccagaattaaaggtatgatataactagaagtatctcattcattatttgttcactaacataa |
41959895 |
T |
|
| Q |
107 |
ttgaannnnnnnngttgctatgaaccattaagttatgtaaccatgtgctaatgatttat----atgaataatgtgacagggtcgtgaacggttgaacggg |
202 |
Q |
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| T |
41959894 |
ttgaattttttttgttgctatgaaccattaagttatgtaaccatgtgctaatgatttatttatatgaataatgtgacagggtcgtgaacggttgaacggg |
41959795 |
T |
|
| Q |
203 |
aaacccttgtatgtgttaatcaaatgttttgagtgttgtgactctcaaaagatgaaagaagaaaatgaatgattggtcactctcaacattggtgctttct |
302 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41959794 |
aaacccttgtatgtgttaatcgaatgttttgagtgttgtgactctcaaaagatgaaagaagaaaatgaatgattggtcactctcaacattggtgctttct |
41959695 |
T |
|
| Q |
303 |
caattggaattccattttattcatatccctcc |
334 |
Q |
| |
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|||||||||||||||||||||||| ||||||| |
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| T |
41959694 |
caattggaattccattttattcatctccctcc |
41959663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 3621311 - 3621366
Alignment:
| Q |
7 |
ggagcagagattgttgagtgtgcatgtgtaattgaattaccagaattaaaggtatg |
62 |
Q |
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||||||||| | || |||||||||||||||||||||||||| ||| | |||||||| |
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| T |
3621311 |
ggagcagaggtagtggagtgtgcatgtgtaattgaattaccggaactgaaggtatg |
3621366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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