View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0759_high_17 (Length: 359)
Name: NF0759_high_17
Description: NF0759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0759_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 66 - 357
Target Start/End: Original strand, 44026953 - 44027247
Alignment:
| Q |
66 |
atctaatgtagatggtttagttaacgagggtg---ttccctatcttcagctttgacaatttaatgcgttcttaaacaactctgtcagcattcaacttcac |
162 |
Q |
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| T |
44026953 |
atctaatgtagatggtttagttaatgagggtgcagttccctatcttcagctttgacaatttaatgctttcttaaacaactctgtcagcattcaacttcac |
44027052 |
T |
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| Q |
163 |
ttaattgaatgatttgcaaatcctaaaataaaaattaaaacctattcacctaagaccaacaaataattaattgtcttgtctcccttgtatgttactcaac |
262 |
Q |
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| T |
44027053 |
ttaattgaatgatttgcaaatcttaaaataaaaattaaaacctattcacctaagaccaacaaataattaattgtcttgtctcccttctatgttactcaac |
44027152 |
T |
|
| Q |
263 |
gctcttttatatcactttataacaaccaattttcttctcaacttcgagctaagctaaaagttttacattaaatgaaaaagtatggcatcagagtt |
357 |
Q |
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| T |
44027153 |
gctcttttatatcactttataacaaccaattttcttctcaaattcgagctaagctaaaagttttacattaaatgaaaaagtatggcatcggagtt |
44027247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 66 - 357
Target Start/End: Complemental strand, 43294008 - 43293714
Alignment:
| Q |
66 |
atctaatgtagatggtttagttaacgagggtg---ttccctatcttcagctttgacaatttaatgcgttcttaaacaactctgtcagcattcaacttcac |
162 |
Q |
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|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
43294008 |
atctaatgtagatggtttagttaatgagggtgcagttccctatcttcagctttgacaatttaatgctttcttaaacaactctgtcagcattcaacttcac |
43293909 |
T |
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| Q |
163 |
ttaattgaatgatttgcaaatcctaaaataaaaattaaaacctattcacctaagaccaacaaataattaattgtcttgtctcccttgtatgttactcaac |
262 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43293908 |
ttaattgaatgatttgcaaatcttaaaataaaaattaaaacctattcacctaagaccaacaaataattaattgtcttgtctcccttctatgttactcaac |
43293809 |
T |
|
| Q |
263 |
gctcttttatatcactttataacaaccaattttcttctcaacttcgagctaagctaaaagttttacattaaatgaaaaagtatggcatcagagtt |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43293808 |
gctcttttatatcactttataacaaccaattttcttctcaaattcgagctaagctaaaagttttacattaaatgaaaaagtatggcatcggagtt |
43293714 |
T |
|
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