View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0759_high_20 (Length: 352)

Name: NF0759_high_20
Description: NF0759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0759_high_20
NF0759_high_20
[»] chr7 (15 HSPs)
chr7 (88-337)||(21592597-21592846)
chr7 (234-337)||(18153357-18153460)
chr7 (235-329)||(40635506-40635598)
chr7 (228-337)||(30770050-30770159)
chr7 (237-312)||(21801716-21801791)
chr7 (88-144)||(6485433-6485489)
chr7 (235-311)||(20093790-20093866)
chr7 (92-155)||(11952761-11952824)
chr7 (248-331)||(47295564-47295647)
chr7 (235-313)||(38612810-38612888)
chr7 (235-312)||(9548828-9548905)
chr7 (235-313)||(29165101-29165178)
chr7 (234-311)||(22705854-22705930)
chr7 (235-337)||(2249860-2249962)
chr7 (88-138)||(19017859-19017909)
[»] scaffold0096 (1 HSPs)
scaffold0096 (235-337)||(10741-10843)
[»] scaffold0265 (2 HSPs)
scaffold0265 (235-337)||(17282-17384)
scaffold0265 (239-337)||(15106-15204)
[»] chr6 (18 HSPs)
chr6 (235-337)||(29094885-29094987)
chr6 (234-328)||(27964962-27965056)
chr6 (235-337)||(17756886-17756988)
chr6 (235-313)||(18736253-18736331)
chr6 (234-311)||(23574648-23574725)
chr6 (237-313)||(18043531-18043607)
chr6 (234-313)||(15369491-15369570)
chr6 (235-337)||(29482820-29482922)
chr6 (235-311)||(15119590-15119665)
chr6 (235-311)||(21508507-21508583)
chr6 (234-311)||(4409451-4409529)
chr6 (235-313)||(14910858-14910936)
chr6 (241-311)||(18729176-18729246)
chr6 (235-337)||(23524249-23524351)
chr6 (237-313)||(19857705-19857781)
chr6 (260-310)||(18258488-18258538)
chr6 (235-311)||(8306314-8306390)
chr6 (235-313)||(15349496-15349574)
[»] chr1 (13 HSPs)
chr1 (235-337)||(21815425-21815527)
chr1 (239-337)||(21817605-21817703)
chr1 (235-337)||(24973756-24973858)
chr1 (237-336)||(49472432-49472531)
chr1 (234-337)||(19967287-19967390)
chr1 (237-337)||(19441982-19442082)
chr1 (234-337)||(33029022-33029125)
chr1 (234-313)||(9859224-9859303)
chr1 (237-310)||(38622059-38622132)
chr1 (235-311)||(8995308-8995384)
chr1 (88-142)||(24593157-24593212)
chr1 (93-144)||(29985013-29985064)
chr1 (87-152)||(18542693-18542757)
[»] chr5 (15 HSPs)
chr5 (235-337)||(23495576-23495678)
chr5 (235-337)||(20899465-20899567)
chr5 (234-337)||(36712518-36712621)
chr5 (235-337)||(13537958-13538060)
chr5 (240-337)||(33622365-33622462)
chr5 (235-337)||(22510210-22510312)
chr5 (235-313)||(24095445-24095523)
chr5 (88-144)||(20058110-20058166)
chr5 (235-313)||(28067893-28067972)
chr5 (235-321)||(5931435-5931521)
chr5 (288-329)||(5590619-5590660)
chr5 (258-313)||(19329816-19329871)
chr5 (235-317)||(38608526-38608608)
chr5 (274-311)||(42792735-42792772)
chr5 (245-313)||(41037524-41037592)
[»] chr4 (17 HSPs)
chr4 (235-337)||(13861542-13861644)
chr4 (235-337)||(16396135-16396237)
chr4 (235-337)||(18284484-18284586)
chr4 (234-331)||(25239929-25240026)
chr4 (235-310)||(8082300-8082375)
chr4 (235-337)||(45313374-45313476)
chr4 (233-313)||(12885532-12885612)
chr4 (233-313)||(10985581-10985661)
chr4 (234-313)||(26780683-26780762)
chr4 (88-154)||(14089429-14089495)
chr4 (259-313)||(8168008-8168062)
chr4 (235-321)||(12217799-12217885)
chr4 (288-337)||(17282412-17282461)
chr4 (88-142)||(10248976-10249031)
chr4 (235-321)||(3268579-3268665)
chr4 (115-145)||(10491356-10491386)
chr4 (235-311)||(28892167-28892243)
[»] chr2 (9 HSPs)
chr2 (235-337)||(27347397-27347499)
chr2 (235-337)||(25133793-25133895)
chr2 (235-313)||(3770513-3770591)
chr2 (235-337)||(23932908-23933010)
chr2 (235-312)||(23755687-23755764)
chr2 (234-313)||(41266064-41266143)
chr2 (235-337)||(19092949-19093051)
chr2 (234-311)||(3105459-3105536)
chr2 (259-337)||(26154875-26154953)
[»] chr8 (15 HSPs)
chr8 (235-329)||(25820953-25821047)
chr8 (237-337)||(11709609-11709709)
chr8 (227-311)||(22609355-22609438)
chr8 (234-331)||(41280676-41280773)
chr8 (236-311)||(32008884-32008959)
chr8 (235-313)||(7454521-7454599)
chr8 (90-144)||(22739948-22740002)
chr8 (235-313)||(33273391-33273469)
chr8 (234-337)||(7999877-7999980)
chr8 (234-305)||(18040356-18040426)
chr8 (238-337)||(18573889-18573988)
chr8 (259-313)||(10532633-10532687)
chr8 (236-309)||(24060815-24060888)
chr8 (259-337)||(17775848-17775926)
chr8 (93-139)||(30422416-30422462)
[»] scaffold0362 (1 HSPs)
scaffold0362 (234-331)||(7217-7314)
[»] scaffold1272 (1 HSPs)
scaffold1272 (234-337)||(1972-2075)
[»] scaffold0026 (1 HSPs)
scaffold0026 (239-313)||(151164-151238)
[»] scaffold0008 (2 HSPs)
scaffold0008 (235-337)||(253542-253644)
scaffold0008 (237-337)||(242902-243002)
[»] scaffold0192 (1 HSPs)
scaffold0192 (234-331)||(12555-12652)
[»] scaffold0084 (1 HSPs)
scaffold0084 (235-336)||(54473-54574)
[»] scaffold0034 (1 HSPs)
scaffold0034 (237-337)||(56229-56329)
[»] scaffold0280 (1 HSPs)
scaffold0280 (235-310)||(909-984)
[»] scaffold0150 (1 HSPs)
scaffold0150 (235-313)||(29926-30004)
[»] scaffold0042 (1 HSPs)
scaffold0042 (235-337)||(68902-69004)
[»] chr3 (4 HSPs)
chr3 (235-284)||(31530488-31530537)
chr3 (235-304)||(19790537-19790606)
chr3 (88-144)||(42369907-42369964)
chr3 (235-312)||(16852878-16852954)
[»] scaffold0083 (1 HSPs)
scaffold0083 (235-313)||(4065-4143)
[»] scaffold0483 (1 HSPs)
scaffold0483 (232-337)||(9359-9464)
[»] scaffold0013 (1 HSPs)
scaffold0013 (234-313)||(37094-37173)
[»] scaffold0170 (1 HSPs)
scaffold0170 (235-337)||(16185-16287)
[»] scaffold0002 (2 HSPs)
scaffold0002 (234-313)||(391713-391792)
scaffold0002 (235-305)||(381022-381092)
[»] scaffold1121 (1 HSPs)
scaffold1121 (115-145)||(378-408)
[»] scaffold0989 (1 HSPs)
scaffold0989 (287-337)||(1444-1494)
[»] scaffold0111 (1 HSPs)
scaffold0111 (235-337)||(2697-2799)


Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 88 - 337
Target Start/End: Original strand, 21592597 - 21592846
Alignment:
Q  88 acatcatcaaataaacctatataatgaacatcatcaaaacacaaacctataactaaaggaaacttcatatttgagcttagccacttaactctttcacaaa 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  21592597 acatcatcaaataaacctatataatgaacatcatcaaaacacaaacctataactaaaagaaacttcatatttgagcttagccacttaactctttcacaaa 21592696  T
Q  188 aaagatcccaagagaaaatcatgtctgctgattctagtattggttcttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatca 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  21592697 aaagatcccaagagaaaatcatgtctgctgattctagtattggttcttgttctggaccggccaaaagaatctttggcccattcacttaggcccaatacca 21592796  T
Q  288 tccaaagcccaaacaccacgtttggctaaattacccgcgacacaaccctt 337  Q
    ||||||| |||||||||| ||||||||||||||| ||||||||| |||||    
T  21592797 tccaaagtccaaacaccatgtttggctaaattactcgcgacacacccctt 21592846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 234 - 337
Target Start/End: Complemental strand, 18153460 - 18153357
Alignment:
Q  234 ttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaac 333  Q
    ||||||||||||||||||||| ||||||| |||||| ||||||||||||||   | |||||||||||||||| ||||||| ||||||| ||||||||| |    
T  18153460 ttgttctggaccggccaaaaggatctttggcccatttacttaggcccaatacactacaaagcccaaacaccatgtttggcaaaattactcgcgacacacc 18153361  T
Q  334 cctt 337  Q
    ||||    
T  18153360 cctt 18153357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 235 - 329
Target Start/End: Original strand, 40635506 - 40635598
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgaca 329  Q
    |||||||||| || |||||| ||||||| ||||||||||||| |||||||||||||||||  ||||||||||||||||| ||||||| |||||||    
T  40635506 tgttctggactggtcaaaaggatctttg-cccattcacttagacccaatatcatccaaag-tcaaacaccacgtttggcaaaattactcgcgaca 40635598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 228 - 337
Target Start/End: Original strand, 30770050 - 30770159
Alignment:
Q  228 tggttcttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcga 327  Q
    ||||| ||||||||||||||||||||| | |||||| ||||| ||||||||||||||  || ||||||||||||| |||||||| | || ||||  ||||    
T  30770050 tggttgttgttctggaccggccaaaaggacctttgaaccatttacttaggcccaatacaattcaaagcccaaacatcacgtttgacgaagttacttgcga 30770149  T
Q  328 cacaaccctt 337  Q
    |||| |||||    
T  30770150 cacacccctt 30770159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 237 - 312
Target Start/End: Original strand, 21801716 - 21801791
Alignment:
Q  237 ttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttgg 312  Q
    |||||||||||||||||| ||||||| |||||| ||||||||||||||  ||| ||| ||||||||||||||||||    
T  21801716 ttctggaccggccaaaaggatctttggcccatttacttaggcccaatactatctaaaacccaaacaccacgtttgg 21801791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 144
Target Start/End: Complemental strand, 6485489 - 6485433
Alignment:
Q  88 acatcatcaaataaacctatataatgaacatcatcaaaacacaaacctataactaaa 144  Q
    |||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||    
T  6485489 acatcatcaaataaacctagctaatgaaaatcatcaaaacacaaacctataactaaa 6485433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 235 - 311
Target Start/End: Complemental strand, 20093866 - 20093790
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttg 311  Q
    ||||||| | |||||||||| |||||||||||||| ||||||| ||||||  |||||||| ||||||||||||||||    
T  20093866 tgttctgaatcggccaaaaggatctttgacccatttacttaggtccaatacaatccaaagtccaaacaccacgtttg 20093790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 92 - 155
Target Start/End: Complemental strand, 11952824 - 11952761
Alignment:
Q  92 catcaaataaacctatataatgaacatcatcaaaacacaaacctataactaaaggaaacttcat 155  Q
    |||||||||||| ||  |||||||||||||||||||| |||||||||| |||||||||||||||    
T  11952824 catcaaataaacttagctaatgaacatcatcaaaacaaaaacctataattaaaggaaacttcat 11952761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 248 - 331
Target Start/End: Original strand, 47295564 - 47295647
Alignment:
Q  248 ccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacaca 331  Q
    ||||||| |||||||||||||| ||||||| ||||||   | |||||||||||||||||||||||  ||||||| |||||||||    
T  47295564 ccaaaaggatctttgacccatttacttaggtccaatacactacaaagcccaaacaccacgtttggaaaaattactcgcgacaca 47295647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 313
Target Start/End: Complemental strand, 38612888 - 38612810
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 313  Q
    |||||||||| || |||||| | |||||||||||| |||||||| |||||  || ||||||||||||||||||||||||    
T  38612888 tgttctggactggtcaaaaggagctttgacccatttacttaggctcaatactattcaaagcccaaacaccacgtttggc 38612810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 9548828 - 9548905
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttgg 312  Q
    |||||||||||||||||||| || |||| |||||| || ||| |||||||  ||||||||||||||| ||||||||||    
T  9548828 tgttctggaccggccaaaaggatgtttggcccatttacgtagtcccaatacaatccaaagcccaaacgccacgtttgg 9548905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 313
Target Start/End: Complemental strand, 29165178 - 29165101
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 313  Q
    |||||||||||||||||| ||   ||||||||||| | ||||||||||||  | |||||||||||||||||||||||||    
T  29165178 tgttctggaccggccaaacgaca-tttgacccatttatttaggcccaatacaacccaaagcccaaacaccacgtttggc 29165101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 311
Target Start/End: Complemental strand, 22705930 - 22705854
Alignment:
Q  234 ttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttg 311  Q
    ||||||| |||||| |||||| |  ||||||||||| ||||||||||||||  |||||||| || |||||||||||||    
T  22705930 ttgttctagaccggtcaaaaggacatttgacccatttacttaggcccaatacaatccaaagtcc-aacaccacgtttg 22705854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 337
Target Start/End: Original strand, 2249860 - 2249962
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 334  Q
    |||||||||||  ||||||| | |||||||| ||| |||||  |||||||  || |||||| |||| |||||||||||| | |||||  |||||||| ||    
T  2249860 tgttctggaccaaccaaaaggagctttgacctatttacttattcccaatacaattcaaagctcaaataccacgtttggcaacattacttgcgacacaccc 2249959  T
Q  335 ctt 337  Q
    |||    
T  2249960 ctt 2249962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 19017909 - 19017859
Alignment:
Q  88 acatcatcaaataaacctatataatgaacatcatcaaaacacaaacctata 138  Q
    ||||||||||||||| |||| ||||||||||||||||| ||  ||||||||    
T  19017909 acatcatcaaataaaactatctaatgaacatcatcaaatcaagaacctata 19017859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 235 - 337
Target Start/End: Original strand, 10741 - 10843
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 334  Q
    ||||||||| |||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||| ||    
T  10741 tgttctggatcggccaaaaggatctttggcccattcacttaggcccaataccatccaaagcccaaacaccacgtttggcaaaattactcgcgacacaccc 10840  T
Q  335 ctt 337  Q
    |||    
T  10841 ctt 10843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 235 - 337
Target Start/End: Complemental strand, 17384 - 17282
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 334  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| || |||||||| ||||||||||||||||||| ||||||| || |||||| ||    
T  17384 tgttctggaccggccaaaagaatctttggcccattcacttaggcccagtaccatccaaatcccaaacaccacgtttggcaaaattactcgtgacacaccc 17285  T
Q  335 ctt 337  Q
    |||    
T  17284 ctt 17282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 239 - 337
Target Start/End: Complemental strand, 15204 - 15106
Alignment:
Q  239 ctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaaccctt 337  Q
    |||||||||||||||| ||||||| |||||||||||||||||| ||  ||||||||||||||||||||||||||| ||||||| ||||||||| |||||    
T  15204 ctggaccggccaaaaggatctttggcccattcacttaggcccagtactatccaaagcccaaacaccacgtttggcaaaattactcgcgacacacccctt 15106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 235 - 337
Target Start/End: Original strand, 29094885 - 29094987
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 334  Q
    |||||||||||| ||||||  ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||| ||    
T  29094885 tgttctggaccgaccaaaaagatctttggcccattcacttaggcccaataccatccaaagcccaaacaccacgtttggcaaaattactcgcgacacaccc 29094984  T
Q  335 ctt 337  Q
    |||    
T  29094985 ctt 29094987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 234 - 328
Target Start/End: Complemental strand, 27965056 - 27964962
Alignment:
Q  234 ttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgac 328  Q
    ||||| |||||| |||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||    
T  27965056 ttgttttggaccagccaaaaggatctttggcccatttacttaggcccaatatcatccaaagcccaaacaccacgtttggtaaaattactcgcgac 27964962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 235 - 337
Target Start/End: Original strand, 17756886 - 17756988
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 334  Q
    ||||| |||||||||||||| ||||||||| |||| ||||||||| ||||  ||| ||||||||||||||||||||||| ||||||| ||||||||| ||    
T  17756886 tgttcgggaccggccaaaaggatctttgacacatttacttaggcctaatacaatcgaaagcccaaacaccacgtttggcaaaattactcgcgacacaccc 17756985  T
Q  335 ctt 337  Q
    |||    
T  17756986 ctt 17756988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 235 - 313
Target Start/End: Complemental strand, 18736331 - 18736253
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 313  Q
    |||||||||||||||||||| || |||| |||||| ||||||||||||||  |||||||||||||||||||||||||||    
T  18736331 tgttctggaccggccaaaaggatttttggcccatttacttaggcccaataatatccaaagcccaaacaccacgtttggc 18736253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 234 - 311
Target Start/End: Complemental strand, 23574725 - 23574648
Alignment:
Q  234 ttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttg 311  Q
    ||||||||||||| ||||||| | ||||| |||||| ||||||||||||||  |||||||||||||||||||||||||    
T  23574725 ttgttctggaccgcccaaaaggacctttggcccatttacttaggcccaatacaatccaaagcccaaacaccacgtttg 23574648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 237 - 313
Target Start/End: Complemental strand, 18043607 - 18043531
Alignment:
Q  237 ttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 313  Q
    |||||||||||||||||| | ||||| |||||| |||||||||||||| ||| ||||||||||||| ||||||||||    
T  18043607 ttctggaccggccaaaaggacctttggcccatttacttaggcccaataccattcaaagcccaaacatcacgtttggc 18043531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 234 - 313
Target Start/End: Original strand, 15369491 - 15369570
Alignment:
Q  234 ttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 313  Q
    ||||||||||||||||||||| ||||| | | |||| ||||| ||||||||| ||||||||| |||||||||||||||||    
T  15369491 ttgttctggaccggccaaaaggatcttaggcgcatttacttaagcccaatataatccaaagctcaaacaccacgtttggc 15369570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 337
Target Start/End: Complemental strand, 29482922 - 29482820
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 334  Q
    |||||||||  ||||||||| ||||||| |||||| ||| |||||||| |  ||||||||||||||| ||||||||||| | |||||  |||||||| ||    
T  29482922 tgttctggaaaggccaaaaggatctttggcccatttactcaggcccaacacaatccaaagcccaaacgccacgtttggcaacattacttgcgacacaccc 29482823  T
Q  335 ctt 337  Q
    |||    
T  29482822 ctt 29482820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 311
Target Start/End: Original strand, 15119590 - 15119665
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttg 311  Q
    |||||||||||||||||||| | ||| | |||||| ||||||||||||||  ||||| |||||||||||||||||||    
T  15119590 tgttctggaccggccaaaaggaccttgg-cccatttacttaggcccaatacaatccagagcccaaacaccacgtttg 15119665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 311
Target Start/End: Original strand, 21508507 - 21508583
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttg 311  Q
    ||||||||| |||||||| | | ||||| |||||| ||||||||||||||  ||||||||| |||||||||||||||    
T  21508507 tgttctggatcggccaaagggacctttggcccatttacttaggcccaatacaatccaaagctcaaacaccacgtttg 21508583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 234 - 311
Target Start/End: Complemental strand, 4409529 - 4409451
Alignment:
Q  234 ttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagccc-aaacaccacgtttg 311  Q
    ||||||| || |||||||||| |  |||| |||||| |||||||||||||||||| |||||||| ||||||||||||||    
T  4409529 ttgttctcgatcggccaaaaggacatttggcccatttacttaggcccaatatcattcaaagcccaaaacaccacgtttg 4409451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 313
Target Start/End: Complemental strand, 14910936 - 14910858
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 313  Q
    |||||||||||||||||||| | ||||  |||||| |||||||| |||||  |||||||| ||||||||||| ||||||    
T  14910936 tgttctggaccggccaaaaggaccttttgcccatttacttaggcacaatagaatccaaagtccaaacaccacatttggc 14910858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 241 - 311
Target Start/End: Complemental strand, 18729246 - 18729176
Alignment:
Q  241 ggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttg 311  Q
    |||| ||||||||| ||||||| |||||| ||||||||| ||||  ||||||| |||||||||||||||||    
T  18729246 ggacaggccaaaaggatctttggcccatttacttaggcctaatactatccaaaacccaaacaccacgtttg 18729176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 337
Target Start/End: Complemental strand, 23524351 - 23524249
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 334  Q
    |||||||||||||||||| | | ||||| |||||| |||||||  |||||  | |||||||||||||||||||||| || || ||||  |||||||| ||    
T  23524351 tgttctggaccggccaaagggacctttggcccatttacttaggtacaatacaacccaaagcccaaacaccacgttttgcaaagttacttgcgacacaccc 23524252  T
Q  335 ctt 337  Q
    |||    
T  23524251 ctt 23524249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 237 - 313
Target Start/End: Original strand, 19857705 - 19857781
Alignment:
Q  237 ttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 313  Q
    |||||||||| ||||||| | ||||| | |||| |||||||| |||||  ||||||||| |||||||||||||||||    
T  19857705 ttctggaccgaccaaaaggacctttggcgcatttacttaggctcaatacaatccaaagctcaaacaccacgtttggc 19857781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 310
Target Start/End: Original strand, 18258488 - 18258538
Alignment:
Q  260 ttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgttt 310  Q
    |||||||||| ||||||||||||||  ||||||||||||||||||| ||||    
T  18258488 ttgacccatttacttaggcccaatacaatccaaagcccaaacaccatgttt 18258538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 311
Target Start/End: Complemental strand, 8306390 - 8306314
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttg 311  Q
    ||||||||||||| |||||| |  |||| |||||  ||||||||||||||  ||| |||||||||||| ||||||||    
T  8306390 tgttctggaccggtcaaaaggacatttggcccatatacttaggcccaatacgatctaaagcccaaacatcacgtttg 8306314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 313
Target Start/End: Original strand, 15349496 - 15349574
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 313  Q
    ||||||||||||| |||||| ||||| | ||| || |||||||||| |||  ||||||||  ||||||||| |||||||    
T  15349496 tgttctggaccggtcaaaaggatcttaggcccgtttacttaggcccgatacaatccaaagatcaaacaccatgtttggc 15349574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 235 - 337
Target Start/End: Original strand, 21815425 - 21815527
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 334  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| || |||||||| ||||||||||||||||||| ||||||| || |||||| ||    
T  21815425 tgttctggaccggccaaaagaatctttggcccattcacttaggcccagtaccatccaaatcccaaacaccacgtttggcaaaattactcgtgacacaccc 21815524  T
Q  335 ctt 337  Q
    |||    
T  21815525 ctt 21815527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 239 - 337
Target Start/End: Original strand, 21817605 - 21817703
Alignment:
Q  239 ctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaaccctt 337  Q
    |||||||||||||||| ||||||| |||||||||||||||||| ||  ||||||||||||||||||||||||||| ||||||| ||||||||| |||||    
T  21817605 ctggaccggccaaaaggatctttggcccattcacttaggcccagtactatccaaagcccaaacaccacgtttggcaaaattactcgcgacacacccctt 21817703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 235 - 337
Target Start/End: Original strand, 24973756 - 24973858
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 334  Q
    |||| |||||||||||||||  ||||||  ||||| |||||||||||||||||||||||||||||||||||||||| || |||||||  |||||||| ||    
T  24973756 tgttatggaccggccaaaaggttctttggtccatttacttaggcccaatatcatccaaagcccaaacaccacgttttgcaaaattacttgcgacacatcc 24973855  T
Q  335 ctt 337  Q
    |||    
T  24973856 ctt 24973858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 237 - 336
Target Start/End: Complemental strand, 49472531 - 49472432
Alignment:
Q  237 ttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaaccct 336  Q
    ||||||||||| |||||| |||||||||||||| |||||||||||||| ||||||||| ||||||||| |||||| | ||||||| ||||| ||| ||||    
T  49472531 ttctggaccgggcaaaaggatctttgacccatttacttaggcccaataccatccaaagtccaaacaccgcgtttgacaaaattactcgcgaaacacccct 49472432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 234 - 337
Target Start/End: Original strand, 19967287 - 19967390
Alignment:
Q  234 ttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaac 333  Q
    |||||||||||||| |||||| | |||||| ||||| ||||||||||||||  |||||||| |||||||||||||||| | || ||||| |||||||| |    
T  19967287 ttgttctggaccggtcaaaaggacctttgatccatttacttaggcccaatacgatccaaagtccaaacaccacgtttgacaaagttacctgcgacacacc 19967386  T
Q  334 cctt 337  Q
    ||||    
T  19967387 cctt 19967390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 237 - 337
Target Start/End: Original strand, 19441982 - 19442082
Alignment:
Q  237 ttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaaccct 336  Q
    |||||||||||||||||| | ||||| |||||| ||||||||||||||  ||||||| | ||||||||||||||||| || ||||  |||||||| ||||    
T  19441982 ttctggaccggccaaaaggacctttggcccatttacttaggcccaatacaatccaaaactcaaacaccacgtttggcaaagttacttgcgacacacccct 19442081  T
Q  337 t 337  Q
    |    
T  19442082 t 19442082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 234 - 337
Target Start/End: Complemental strand, 33029125 - 33029022
Alignment:
Q  234 ttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaac 333  Q
    ||||||||||||||||||||  |  |||| | || | |||||||| |||||| ||||||||||||||||||||||||| ||| |||||  |||||||| |    
T  33029125 ttgttctggaccggccaaaatgagttttggctcaattacttaggcacaatataatccaaagcccaaacaccacgtttgactatattacttgcgacacacc 33029026  T
Q  334 cctt 337  Q
    ||||    
T  33029025 cctt 33029022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 313
Target Start/End: Complemental strand, 9859303 - 9859224
Alignment:
Q  234 ttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 313  Q
    ||||||||||||||||||||| |||||||||  ||| |||||| || ||||  |||||||  ||||||||||||||||||    
T  9859303 ttgttctggaccggccaaaaggatctttgacttattgacttagacctaatacaatccaaaatccaaacaccacgtttggc 9859224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 310
Target Start/End: Complemental strand, 38622132 - 38622059
Alignment:
Q  237 ttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgttt 310  Q
    ||||||||||| |||||| |  ||||||| ||| ||||||||||||||  ||||||||| |||||| |||||||    
T  38622132 ttctggaccggacaaaaggacttttgacctatttacttaggcccaatacaatccaaagctcaaacatcacgttt 38622059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 311
Target Start/End: Original strand, 8995308 - 8995384
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttg 311  Q
    |||| ||||||| ||||||| | ||||| |||||| |||||| |||||||  ||| |||||| ||||||||||||||    
T  8995308 tgttttggaccgaccaaaaggacctttggcccatttacttagacccaatactatctaaagcctaaacaccacgtttg 8995384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 142
Target Start/End: Original strand, 24593157 - 24593212
Alignment:
Q  88 acatcatcaaat-aaacctatataatgaacatcatcaaaacacaaacctataacta 142  Q
    |||||||||||| ||| |||| || | |||||||||||||||||||||||||||||    
T  24593157 acatcatcaaattaaaactatctactaaacatcatcaaaacacaaacctataacta 24593212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 93 - 144
Target Start/End: Original strand, 29985013 - 29985064
Alignment:
Q  93 atcaaataaacctatataatgaacatcatcaaaacacaaacctataactaaa 144  Q
    ||||||||||||||  ||||| ||||||||||||| ||||||||| ||||||    
T  29985013 atcaaataaacctagctaatggacatcatcaaaacgcaaacctatgactaaa 29985064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 152
Target Start/End: Original strand, 18542693 - 18542757
Alignment:
Q  87 gacatcatcaaataaacctatataatgaacatcatcaaaacacaaacctataactaaaggaaactt 152  Q
    ||||||||||||||||||||  || |||||||||  ||||||||||| ||||| |||||| |||||    
T  18542693 gacatcatcaaataaacctagcta-tgaacatcacgaaaacacaaacttataattaaaggcaactt 18542757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 235 - 337
Target Start/End: Complemental strand, 23495678 - 23495576
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 334  Q
    |||| |||||||| |||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||| || ||||||| ||||||||| ||    
T  23495678 tgttttggaccgggcaaaaggatctttgacccatttacttaggctcaatatcatccaaagcccaaacaccacgttttgcaaaattactcgcgacacaccc 23495579  T
Q  335 ctt 337  Q
    |||    
T  23495578 ctt 23495576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 235 - 337
Target Start/End: Original strand, 20899465 - 20899567
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 334  Q
    ||||||||||| |||||||| ||||||| |||||||||||| ||||| || |||||||||||||||||||||||||||  ||||||| ||||||||| ||    
T  20899465 tgttctggaccagccaaaaggatctttggcccattcacttaagcccagtaccatccaaagcccaaacaccacgtttggaaaaattactcgcgacacaccc 20899564  T
Q  335 ctt 337  Q
    |||    
T  20899565 ctt 20899567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 234 - 337
Target Start/End: Original strand, 36712518 - 36712621
Alignment:
Q  234 ttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaac 333  Q
    ||||||| ||| ||| ||||| |||||||||||||| ||||||||||||||   ||||||||| |||||||||||||||| ||||||||||||||||| |    
T  36712518 ttgttctagactggctaaaaggatctttgacccatttacttaggcccaatacactccaaagcctaaacaccacgtttggcaaaattacccgcgacacacc 36712617  T
Q  334 cctt 337  Q
    ||||    
T  36712618 cctt 36712621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 235 - 337
Target Start/End: Complemental strand, 13538060 - 13537958
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 334  Q
    ||||||||||||  ||||||||| ||||  ||||| |||||||||||||| ||||||||||||||||| |||||||||| ||||||| ||||||||| ||    
T  13538060 tgttctggaccgatcaaaagaatatttggtccatttacttaggcccaataccatccaaagcccaaacatcacgtttggcaaaattactcgcgacacaccc 13537961  T
Q  335 ctt 337  Q
    |||    
T  13537960 ctt 13537958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 240 - 337
Target Start/End: Original strand, 33622365 - 33622462
Alignment:
Q  240 tggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaaccctt 337  Q
    ||||||||||||||| |||||||||||||| ||||| ||||||||  |||||||||||||||| || ||||||| ||||||| ||||||||| |||||    
T  33622365 tggaccggccaaaaggatctttgacccatttacttaagcccaatacaatccaaagcccaaacatcatgtttggcaaaattactcgcgacacacccctt 33622462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 235 - 337
Target Start/End: Complemental strand, 22510312 - 22510210
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 334  Q
    |||||||||||||||||||| ||||||| |||||| ||||||||||||||   |  ||||  |||||||||||||||   ||||||||||||||||| ||    
T  22510312 tgttctggaccggccaaaaggatctttggcccatttacttaggcccaatacactataaagttcaaacaccacgtttgataaaattacccgcgacacaccc 22510213  T
Q  335 ctt 337  Q
    |||    
T  22510212 ctt 22510210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 313
Target Start/End: Complemental strand, 24095523 - 24095445
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 313  Q
    |||||||||||||||||||| |  |||| |||||  ||||||||||||||  |||||||||||||| ||||||||||||    
T  24095523 tgttctggaccggccaaaaggagttttggcccatctacttaggcccaatacaatccaaagcccaaataccacgtttggc 24095445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 88 - 144
Target Start/End: Original strand, 20058110 - 20058166
Alignment:
Q  88 acatcatcaaataaacctatataatgaacatcatcaaaacacaaacctataactaaa 144  Q
    |||||||||||||||  ||| ||||||||||||||||||||||||| ||||||||||    
T  20058110 acatcatcaaataaaattatctaatgaacatcatcaaaacacaaacttataactaaa 20058166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 313
Target Start/End: Original strand, 28067893 - 28067972
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatcc-aaagcccaaacaccacgtttggc 313  Q
    |||||||||||||||||||| |||||||||||| | ||||| ||||||||  |||| ||||| ||| |||||||||||||    
T  28067893 tgttctggaccggccaaaaggatctttgacccacttacttacgcccaatacaatccaaaagcacaagcaccacgtttggc 28067972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 321
Target Start/End: Complemental strand, 5931521 - 5931435
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattac 321  Q
    |||| ||||| ||||||||| | ||||| |||||| ||||||||||||||  ||||| | |||||||| | |||||||| |||||||    
T  5931521 tgttatggactggccaaaagtacctttggcccatttacttaggcccaatacaatccacaacccaaacatcgcgtttggcaaaattac 5931435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 329
Target Start/End: Original strand, 5590619 - 5590660
Alignment:
Q  288 tccaaagcccaaacaccacgtttggctaaattacccgcgaca 329  Q
    |||||||||||||||||||||||||| ||||||| |||||||    
T  5590619 tccaaagcccaaacaccacgtttggcaaaattactcgcgaca 5590660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 313
Target Start/End: Original strand, 19329816 - 19329871
Alignment:
Q  258 ctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 313  Q
    ||||| |||||| ||||||||||||||  || ||||||||||| ||||||||||||    
T  19329816 ctttggcccatttacttaggcccaatacaattcaaagcccaaataccacgtttggc 19329871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 317
Target Start/End: Complemental strand, 38608608 - 38608526
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaa 317  Q
    |||||||||||||||||||| | ||||||| |||| |||||||  |||||  || |||||  ||||| ||| |||||||||||    
T  38608608 tgttctggaccggccaaaaggacctttgactcatttacttaggttcaatacaattcaaagttcaaactccatgtttggctaaa 38608526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 42792772 - 42792735
Alignment:
Q  274 taggcccaatatcatccaaagcccaaacaccacgtttg 311  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  42792772 taggcccaatatcaaccaaagcccaaactccacgtttg 42792735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 313
Target Start/End: Original strand, 41037524 - 41037592
Alignment:
Q  245 cggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 313  Q
    |||||||||| | || ||||||||| |||||| | |||||  ||||||||||||||||| ||| |||||    
T  41037524 cggccaaaaggacctatgacccatttacttagactcaatacaatccaaagcccaaacactacggttggc 41037592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 235 - 337
Target Start/End: Complemental strand, 13861644 - 13861542
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 334  Q
    |||||||||||||||||||| ||||||||| |||| |||||||||||||| ||||||||||||||||||||||| |||  ||||||| ||||||||| ||    
T  13861644 tgttctggaccggccaaaaggatctttgactcatttacttaggcccaataccatccaaagcccaaacaccacgtctggtaaaattactcgcgacacaccc 13861545  T
Q  335 ctt 337  Q
    |||    
T  13861544 ctt 13861542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 235 - 337
Target Start/End: Original strand, 16396135 - 16396237
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 334  Q
    |||||||||||||||||||| ||||||| |||||| ||||||||||||||  |||||||||| |||||||||||||||| || ||||  |||||||| ||    
T  16396135 tgttctggaccggccaaaaggatctttggcccatttacttaggcccaatacaatccaaagccaaaacaccacgtttggcaaagttacttgcgacacaccc 16396234  T
Q  335 ctt 337  Q
    |||    
T  16396235 ctt 16396237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 235 - 337
Target Start/End: Original strand, 18284484 - 18284586
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 334  Q
    |||| ||||||||||||||| ||||||| |||||| | |||||||||||| ||||||||||||||||| |||||||||| ||||||| | ||||||| ||    
T  18284484 tgttatggaccggccaaaaggatctttggcccatttaattaggcccaataccatccaaagcccaaacatcacgtttggcaaaattactcacgacacaccc 18284583  T
Q  335 ctt 337  Q
    |||    
T  18284584 ctt 18284586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 234 - 331
Target Start/End: Complemental strand, 25240026 - 25239929
Alignment:
Q  234 ttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacaca 331  Q
    ||||||||||||||||||||| ||||||| |||||| ||||||||||||||   ||||||||| |||||||||||||| | ||||||| |||||||||    
T  25240026 ttgttctggaccggccaaaaggatctttggcccatttacttaggcccaatacactccaaagcctaaacaccacgtttgacaaaattactcgcgacaca 25239929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 235 - 310
Target Start/End: Complemental strand, 8082375 - 8082300
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgttt 310  Q
    |||||||||||| ||||||| ||||| | |||||||||||||||||||||  ||||||||||||||||||||||||    
T  8082375 tgttctggaccgtccaaaaggatcttaggcccattcacttaggcccaatacaatccaaagcccaaacaccacgttt 8082300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 235 - 337
Target Start/End: Complemental strand, 45313476 - 45313374
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 334  Q
    |||||||||||||||||||| | |||||||||||| ||||||||||||||  || |||||||||| ||||| ||||||| | |||||  |||||||| ||    
T  45313476 tgttctggaccggccaaaaggaactttgacccatttacttaggcccaatacaattcaaagcccaagcaccatgtttggcaacattacttgcgacacaccc 45313377  T
Q  335 ctt 337  Q
    |||    
T  45313376 ctt 45313374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 12885612 - 12885532
Alignment:
Q  233 cttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 313  Q
    |||||| ||||||||||||||| |  ||||||||||| ||||||||||||||  ||||||| |||||||||||||||||||    
T  12885612 cttgttttggaccggccaaaaggacttttgacccatttacttaggcccaatacaatccaaaacccaaacaccacgtttggc 12885532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 233 - 313
Target Start/End: Original strand, 10985581 - 10985661
Alignment:
Q  233 cttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 313  Q
    ||||||||||||||| |||||| | ||||| |||||| ||||||||||||||  ||||||||  |||||||||||||||||    
T  10985581 cttgttctggaccgggcaaaaggacctttggcccatttacttaggcccaatacaatccaaaggtcaaacaccacgtttggc 10985661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 234 - 313
Target Start/End: Original strand, 26780683 - 26780762
Alignment:
Q  234 ttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 313  Q
    ||||||||||||||||||||| |  |||| |||||| || |||||||||||  || ||||||||||||||||||||||||    
T  26780683 ttgttctggaccggccaaaaggagttttggcccatttacataggcccaatactattcaaagcccaaacaccacgtttggc 26780762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 14089495 - 14089429
Alignment:
Q  88 acatcatcaaataaacctatataatgaacatcatcaaaacacaaacctataactaaaggaaacttca 154  Q
    |||||||||||||||||||  ||||||||||||||||||||||||  | |||||||| | |||||||    
T  14089495 acatcatcaaataaacctagctaatgaacatcatcaaaacacaaatttgtaactaaaagcaacttca 14089429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 313
Target Start/End: Complemental strand, 8168062 - 8168008
Alignment:
Q  259 tttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 313  Q
    ||||||||||| ||||||| ||||||  ||||||||||||||||||| |||||||    
T  8168062 tttgacccatttacttaggtccaatacaatccaaagcccaaacaccatgtttggc 8168008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 321
Target Start/End: Complemental strand, 12217885 - 12217799
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattac 321  Q
    |||||||||| ||||||||| | ||||| |||||| |||||| || ||||  ||||| |||||||||||| ||||| || |||||||    
T  12217885 tgttctggactggccaaaaggacctttggcccatttacttagtcctaatacaatccacagcccaaacaccgcgtttagcaaaattac 12217799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 337
Target Start/End: Original strand, 17282412 - 17282461
Alignment:
Q  288 tccaaagcccaaacaccacgtttggctaaattacccgcgacacaaccctt 337  Q
    ||||||||||| |||||||||||||| ||||||| ||||||||| |||||    
T  17282412 tccaaagcccagacaccacgtttggcaaaattactcgcgacacacccctt 17282461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 142
Target Start/End: Original strand, 10248976 - 10249031
Alignment:
Q  88 acatcatcaaataaac-ctatataatgaacatcatcaaaacacaaacctataacta 142  Q
    |||||||||||||||  |||  ||||||||||||| ||||||||||||||||||||    
T  10248976 acatcatcaaataaaaactacctaatgaacatcataaaaacacaaacctataacta 10249031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 321
Target Start/End: Complemental strand, 3268665 - 3268579
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattac 321  Q
    ||||| |||||||||||||| | ||||| |||||| |||||||| ||| |  ||||| ||||||||||||   |||||| |||||||    
T  3268665 tgttcgggaccggccaaaaggacctttggcccatttacttaggctcaaaacaatccacagcccaaacaccgattttggcaaaattac 3268579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 145
Target Start/End: Complemental strand, 10491386 - 10491356
Alignment:
Q  115 acatcatcaaaacacaaacctataactaaag 145  Q
    |||||||||||||||||||||||||||||||    
T  10491386 acatcatcaaaacacaaacctataactaaag 10491356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 311
Target Start/End: Complemental strand, 28892243 - 28892167
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttg 311  Q
    ||||||||||||| |||||| ||||| |  ||||| | ||||||||||||  ||| ||||  |||||||||||||||    
T  28892243 tgttctggaccggtcaaaaggatcttaggtccatttatttaggcccaatacaatctaaagttcaaacaccacgtttg 28892167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 235 - 337
Target Start/End: Complemental strand, 27347499 - 27347397
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 334  Q
    ||||||||||||| |||||| ||||||| |||||| ||||| |||||||| ||||||||||||||||| |||||||||| ||||||| ||||||||| ||    
T  27347499 tgttctggaccggtcaaaaggatctttggcccatttacttaagcccaataccatccaaagcccaaacatcacgtttggcaaaattactcgcgacacaccc 27347400  T
Q  335 ctt 337  Q
    |||    
T  27347399 ctt 27347397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 235 - 337
Target Start/End: Original strand, 25133793 - 25133895
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 334  Q
    |||||||||| ||||||||  |||||||||||||| ||||||||||| ||  ||||||||||||||||||||||||||| || ||||  |||||||| ||    
T  25133793 tgttctggacgggccaaaaagatctttgacccatttacttaggcccattacaatccaaagcccaaacaccacgtttggcaaagttacttgcgacacaccc 25133892  T
Q  335 ctt 337  Q
    |||    
T  25133893 ctt 25133895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 235 - 313
Target Start/End: Complemental strand, 3770591 - 3770513
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 313  Q
    |||||||||||||||||||| | ||||| |||||| ||||||||||||||  || ||||||||||||||||||||||||    
T  3770591 tgttctggaccggccaaaaggacctttggcccatttacttaggcccaatacaattcaaagcccaaacaccacgtttggc 3770513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 235 - 337
Target Start/End: Complemental strand, 23933010 - 23932908
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 334  Q
    |||||| ||||||||||||| ||||||| |||||| ||||||||| ||||  |||||||||||||||||||||| || | | |||||  |||||||| ||    
T  23933010 tgttctagaccggccaaaaggatctttggcccatttacttaggcctaatacaatccaaagcccaaacaccacgtctgacaacattacttgcgacacaccc 23932911  T
Q  335 ctt 337  Q
    |||    
T  23932910 ctt 23932908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 23755687 - 23755764
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttgg 312  Q
    |||||||||||||||||||| | ||||| |||||| || |||||||||||  ||||||||||||||||||| ||||||    
T  23755687 tgttctggaccggccaaaaggacctttggcccatttacctaggcccaatacaatccaaagcccaaacaccatgtttgg 23755764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 313
Target Start/End: Original strand, 41266064 - 41266143
Alignment:
Q  234 ttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 313  Q
    |||||||||||||| |||||| || || |||||||| ||||||||||||||  |||||||  |||||||||| |||||||    
T  41266064 ttgttctggaccggtcaaaaggattttagacccatttacttaggcccaatacgatccaaaatccaaacaccatgtttggc 41266143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 337
Target Start/End: Complemental strand, 19093051 - 19092949
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 334  Q
    ||||||||| ||| |||||| |  ||||| ||||| ||||||||||||||| || |||||||||||||||| ||||||  | |||||  |||||||| ||    
T  19093051 tgttctggatcggacaaaaggagatttgatccatttacttaggcccaatattattcaaagcccaaacaccatgtttggtaacattacttgcgacacatcc 19092952  T
Q  335 ctt 337  Q
    |||    
T  19092951 ctt 19092949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 311
Target Start/End: Complemental strand, 3105536 - 3105459
Alignment:
Q  234 ttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttg 311  Q
    ||||||||||| ||||||||| | ||||   ||||| |||||||||||| |  |||||||||||||||||||||||||    
T  3105536 ttgttctggactggccaaaaggacctttagtccatttacttaggcccaacacaatccaaagcccaaacaccacgtttg 3105459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 337
Target Start/End: Original strand, 26154875 - 26154953
Alignment:
Q  259 tttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaaccctt 337  Q
    ||||||||||| ||||||| ||||||| ||  ||||  ||||||||||||||||| || ||||  |||||||| |||||    
T  26154875 tttgacccatttacttaggtccaatataatttaaagttcaaacaccacgtttggcaaagttacttgcgacacatccctt 26154953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 235 - 329
Target Start/End: Complemental strand, 25821047 - 25820953
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgaca 329  Q
    |||||||||||||||||||| ||||||| || ||| | || |||| |||| |||||||||||||||||||||||||||| ||||||| |||||||    
T  25821047 tgttctggaccggccaaaaggatctttggccaatttatttgggccgaataccatccaaagcccaaacaccacgtttggcaaaattactcgcgaca 25820953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 237 - 337
Target Start/End: Complemental strand, 11709709 - 11709609
Alignment:
Q  237 ttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaaccct 336  Q
    |||||||||||||||||| ||||||| |||||| ||||||||||||||  |||||||||||||| |||||||||| | | |||||  |||||||| ||||    
T  11709709 ttctggaccggccaaaaggatctttggcccatttacttaggcccaatacaatccaaagcccaaataccacgtttgacaatattacttgcgacacacccct 11709610  T
Q  337 t 337  Q
    |    
T  11709609 t 11709609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 227 - 311
Target Start/End: Original strand, 22609355 - 22609438
Alignment:
Q  227 ttggttcttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttg 311  Q
    ||||||| |||||||||||| ||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||||| |||||    
T  22609355 ttggttcctgttctggaccgaccaaaaggatctttgatccatttacttaggcccaata-catccaaagcccaaacaccatgtttg 22609438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 234 - 331
Target Start/End: Original strand, 41280676 - 41280773
Alignment:
Q  234 ttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacaca 331  Q
    |||||||||||||| |||||| | |||||||||||| |||||||||||| |  ||||||||||||||||||| ||||||| | |||||  ||||||||    
T  41280676 ttgttctggaccggacaaaaggacctttgacccatttacttaggcccaacacaatccaaagcccaaacaccatgtttggcaacattacttgcgacaca 41280773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 236 - 311
Target Start/End: Original strand, 32008884 - 32008959
Alignment:
Q  236 gttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttg 311  Q
    ||||||||||||||||||| | |||||||||||  ||||||||||||||  ||| |||||||||||||||||||||    
T  32008884 gttctggaccggccaaaaggacctttgacccatatacttaggcccaatacaatcgaaagcccaaacaccacgtttg 32008959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 235 - 313
Target Start/End: Original strand, 7454521 - 7454599
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 313  Q
    |||||||||||||||||||| ||||||| || ||| |||||||||||| |  ||||||||||||||| |||||||||||    
T  7454521 tgttctggaccggccaaaaggatctttggcctatttacttaggcccaacacaatccaaagcccaaactccacgtttggc 7454599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 90 - 144
Target Start/End: Complemental strand, 22740002 - 22739948
Alignment:
Q  90 atcatcaaataaacctatataatgaacatcatcaaaacacaaacctataactaaa 144  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  22740002 atcatcaaataaacctagctaatgaacatcatcaaaacacaaacctataactaaa 22739948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 235 - 313
Target Start/End: Original strand, 33273391 - 33273469
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 313  Q
    |||| ||||||| ||||||| ||||||| |||||| ||||||||| ||||  |||||||||||||||||||||||||||    
T  33273391 tgttatggaccgaccaaaaggatctttggcccatttacttaggcctaatactatccaaagcccaaacaccacgtttggc 33273469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 234 - 337
Target Start/End: Complemental strand, 7999980 - 7999877
Alignment:
Q  234 ttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaac 333  Q
    ||||||||||||||||||||| |  |||| |||||| ||||||||||||||  ||||| | ||| |||||| |||||||| |||||||  |||||||| |    
T  7999980 ttgttctggaccggccaaaaggacatttggcccatttacttaggcccaatacaatccacaacccgaacaccgcgtttggcaaaattacttgcgacacacc 7999881  T
Q  334 cctt 337  Q
    ||||    
T  7999880 cctt 7999877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 234 - 305
Target Start/End: Original strand, 18040356 - 18040426
Alignment:
Q  234 ttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacacca 305  Q
    ||||||||||||||||||||| | ||||| |||||| ||||||| ||||||| |||||||||||||||||||    
T  18040356 ttgttctggaccggccaaaaggacctttggcccatttacttagg-ccaatataatccaaagcccaaacacca 18040426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 238 - 337
Target Start/End: Original strand, 18573889 - 18573988
Alignment:
Q  238 tctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaaccctt 337  Q
    ||||||||||||||||| || ||||  ||||| ||||||||| ||||  || |||||||||||||||||||||||| || ||||  |||||||| |||||    
T  18573889 tctggaccggccaaaaggatttttggtccatttacttaggcctaatacaatgcaaagcccaaacaccacgtttggcaaagttacttgcgacacatccctt 18573988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 313
Target Start/End: Original strand, 10532633 - 10532687
Alignment:
Q  259 tttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 313  Q
    ||||||||||| |||||||||||||| ||| |||||| ||||| |||||||||||    
T  10532633 tttgacccatttacttaggcccaataccattcaaagctcaaacgccacgtttggc 10532687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 309
Target Start/End: Complemental strand, 24060888 - 24060815
Alignment:
Q  236 gttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtt 309  Q
    |||||||||||| |||||| | ||||| |||||| ||||||||||||||  |||||||| | ||| ||||||||    
T  24060888 gttctggaccggtcaaaaggagctttggcccatttacttaggcccaatacaatccaaagtcgaaataccacgtt 24060815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 337
Target Start/End: Complemental strand, 17775926 - 17775848
Alignment:
Q  259 tttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaaccctt 337  Q
    |||| |||||| || |||| ||||||  |||||||||||||||| |||||||||| || ||||  |||||||| |||||    
T  17775926 tttggcccatttacctaggtccaatacaatccaaagcccaaacatcacgtttggcaaagttacttgcgacacacccctt 17775848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 139
Target Start/End: Complemental strand, 30422462 - 30422416
Alignment:
Q  93 atcaaataaacctatataatgaacatcatcaaaacacaaacctataa 139  Q
    ||||||||||||||  ||||| ||||||||||||||||||| |||||    
T  30422462 atcaaataaacctagctaatggacatcatcaaaacacaaacatataa 30422416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 234 - 331
Target Start/End: Original strand, 7217 - 7314
Alignment:
Q  234 ttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacaca 331  Q
    ||||| ||||||||| ||||| ||||||| |||||| | ||| | ||||||||||||||||||||||||||| ||||||| ||||||| |||||||||    
T  7217 ttgttttggaccggctaaaaggatctttggcccatttatttatgtccaatatcatccaaagcccaaacaccaagtttggcaaaattactcgcgacaca 7314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1272 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold1272
Description:

Target: scaffold1272; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 234 - 337
Target Start/End: Complemental strand, 2075 - 1972
Alignment:
Q  234 ttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaac 333  Q
    ||||||||||||||||||||| |  |||| |||||| |||| || ||||||  || |||||||||||||||||||||||| |||||||  |||||||| |    
T  2075 ttgttctggaccggccaaaaggagttttggcccatttacttgggtccaatactattcaaagcccaaacaccacgtttggcaaaattacttgcgacacacc 1976  T
Q  334 cctt 337  Q
    ||||    
T  1975 cctt 1972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 239 - 313
Target Start/End: Original strand, 151164 - 151238
Alignment:
Q  239 ctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 313  Q
    |||||||||||||||| ||||||| |||||| ||||||||| ||||  ||||||||||||||||| |||||||||    
T  151164 ctggaccggccaaaaggatctttggcccatttacttaggcctaatacaatccaaagcccaaacactacgtttggc 151238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 235 - 337
Target Start/End: Complemental strand, 253644 - 253542
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 334  Q
    |||| ||||| ||||||||||| ||||| ||||||  |||||||||||||  ||||||| ||||||||||||||||||| | |||||  |||||||| ||    
T  253644 tgttttggacaggccaaaagaacctttggcccattttcttaggcccaatacaatccaaatcccaaacaccacgtttggcaacattacgtgcgacacaccc 253545  T
Q  335 ctt 337  Q
    |||    
T  253544 ctt 253542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 237 - 337
Target Start/End: Complemental strand, 243002 - 242902
Alignment:
Q  237 ttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaaccct 336  Q
    ||||| |||||||||||| | ||||| |||||| ||||||||||||||  ||| ||||||||||||||| ||||||| | |||||  |||||||| ||||    
T  243002 ttctgtaccggccaaaaggacctttgtcccatttacttaggcccaatacaatctaaagcccaaacaccaagtttggcaacattacttgcgacacacccct 242903  T
Q  337 t 337  Q
    |    
T  242902 t 242902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 234 - 331
Target Start/End: Complemental strand, 12652 - 12555
Alignment:
Q  234 ttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacaca 331  Q
    ||||||||||||||||||||| | ||||| |||||| ||||||||| ||||  || ||||||||||||||||||||| || | |||||  ||||||||    
T  12652 ttgttctggaccggccaaaaggagctttggcccatttacttaggcctaatacaattcaaagcccaaacaccacgttttgcaacattacttgcgacaca 12555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 235 - 336
Target Start/End: Original strand, 54473 - 54574
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 334  Q
    |||||||||||||||||||| ||||||| |||||| |||||| |||||||   | |||||||||||  ||||||||||| ||||||| || |||||| ||    
T  54473 tgttctggaccggccaaaaggatctttggcccatttacttagacccaatacactacaaagcccaaaatccacgtttggcaaaattactcgagacacaccc 54572  T
Q  335 ct 336  Q
    ||    
T  54573 ct 54574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 237 - 337
Target Start/End: Original strand, 56229 - 56329
Alignment:
Q  237 ttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaaccct 336  Q
    |||||||| | | ||||| | ||||| |||||| ||||||||||||||  ||||||||||||||||||||||||||| || ||||  |||||||| ||||    
T  56229 ttctggactgacaaaaaggacctttggcccatttacttaggcccaatacaatccaaagcccaaacaccacgtttggcgaagttacttgcgacacacccct 56328  T
Q  337 t 337  Q
    |    
T  56329 t 56329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0280 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 310
Target Start/End: Original strand, 909 - 984
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgttt 310  Q
    ||||||||||||| |||||| | ||||| |||||| ||||||| ||||||  ||||||||||||||||||||||||    
T  909 tgttctggaccggtcaaaaggacctttggcccatttacttaggtccaatacaatccaaagcccaaacaccacgttt 984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 313
Target Start/End: Original strand, 29926 - 30004
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 313  Q
    |||||||||||||||||||| | ||||| |||||| | |||||||||| |  |||||||||||||||| ||||||||||    
T  29926 tgttctggaccggccaaaaggacctttggcccatttaattaggcccaacacaatccaaagcccaaacagcacgtttggc 30004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 337
Target Start/End: Complemental strand, 69004 - 68902
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 334  Q
    ||||||| |||||||||||| ||||||| |||||| ||||||||||||||  || ||||||||| || |||||||| || | |||||  |||||||| ||    
T  69004 tgttctgaaccggccaaaaggatctttggcccatttacttaggcccaatacaattcaaagcccagactccacgttttgcaacattacttgcgacacaccc 68905  T
Q  335 ctt 337  Q
    |||    
T  68904 ctt 68902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 31530488 - 31530537
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaata 284  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  31530488 tgttctggaccggccaaaagaatctttgacccatttacttagacccaata 31530537  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 304
Target Start/End: Complemental strand, 19790606 - 19790537
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacacc 304  Q
    |||| ||||| ||||||||| ||| ||| |||||| |||||||||||||| |||||||| ||||||||||    
T  19790606 tgttatggactggccaaaaggatcattggcccatttacttaggcccaataccatccaaaacccaaacacc 19790537  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 88 - 144
Target Start/End: Original strand, 42369907 - 42369964
Alignment:
Q  88 acatcatcaaataaacctatataatga-acatcatcaaaacacaaacctataactaaa 144  Q
    |||||||||||||||||||  || | | ||||||||||||||||||||||||||||||    
T  42369907 acatcatcaaataaacctagctatttagacatcatcaaaacacaaacctataactaaa 42369964  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 16852878 - 16852954
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttgg 312  Q
    ||||||||||||||||||||  | ||||  ||||| ||||||||||||||  ||||||||| ||||  ||||||||||    
T  16852878 tgttctggaccggccaaaagggtttttggaccatt-acttaggcccaatacaatccaaagctcaaattccacgtttgg 16852954  T

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Target: scaffold0083 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 313
Target Start/End: Original strand, 4065 - 4143
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 313  Q
    |||||||||||||||||||| || |||| | |||| ||||||| | ||||  |||||||| ||||||||||||||||||    
T  4065 tgttctggaccggccaaaaggatatttggctcatttacttaggtcaaatacaatccaaagtccaaacaccacgtttggc 4143  T

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Target: scaffold0483 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 337
Target Start/End: Complemental strand, 9464 - 9359
Alignment:
Q  232 tcttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacaca 331  Q
    ||||||| |||||||||| | || |  |||| |||||| |||| || ||||||  || |||||||||||||||||||||||| |||||||  ||||||||    
T  9464 tcttgttatggaccggcctagaggagttttggcccatttacttgggtccaatactattcaaagcccaaacaccacgtttggcaaaattacttgcgacaca 9365  T
Q  332 accctt 337  Q
     |||||    
T  9364 cccctt 9359  T

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Target: scaffold0013 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 313
Target Start/End: Original strand, 37094 - 37173
Alignment:
Q  234 ttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 313  Q
    |||||||||||||| |||||| | |||||||||||| |||||||| |||||  ||||||| |  ||| ||||||||||||    
T  37094 ttgttctggaccggtcaaaaggagctttgacccatttacttaggctcaatacaatccaaatctaaaataccacgtttggc 37173  T

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Target: scaffold0170 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 337
Target Start/End: Original strand, 16185 - 16287
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 334  Q
    |||||||||| ||||||||| | |||||  ||||| ||||||||||||||  | ||||||||||||||| | ||||||  || ||||  |||||||| ||    
T  16185 tgttctggactggccaaaaggacctttggtccatttacttaggcccaatacaacccaaagcccaaacactatgtttggaaaagttacatgcgacacaccc 16284  T
Q  335 ctt 337  Q
    |||    
T  16285 ctt 16287  T

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Target: scaffold0002 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 313
Target Start/End: Complemental strand, 391792 - 391713
Alignment:
Q  234 ttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 313  Q
    ||||||||||||| ||||||| | || ||  ||||| ||||||| ||||||  ||||||| ||||||||||||| |||||    
T  391792 ttgttctggaccgaccaaaaggacctgtggtccatttacttaggtccaatacaatccaaaccccaaacaccacggttggc 391713  T

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Target: scaffold0002; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 381092 - 381022
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacacca 305  Q
    |||| ||||||||||||||| |  | || |||||| ||||| ||||||||  |||||||||||||||||||    
T  381092 tgttatggaccggccaaaaggacatgtggcccatttacttacgcccaatacaatccaaagcccaaacacca 381022  T

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Target: scaffold1121 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1121
Description:

Target: scaffold1121; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 145
Target Start/End: Complemental strand, 408 - 378
Alignment:
Q  115 acatcatcaaaacacaaacctataactaaag 145  Q
    |||||||||||||||||||||||||||||||    
T  408 acatcatcaaaacacaaacctataactaaag 378  T

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Target: scaffold0989 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0989
Description:

Target: scaffold0989; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 337
Target Start/End: Original strand, 1444 - 1494
Alignment:
Q  287 atccaaagcccaaacaccacgtttggctaaattacccgcgacacaaccctt 337  Q
    ||||||||||||||||||||||||||| || ||||  |||||||| |||||    
T  1444 atccaaagcccaaacaccacgtttggcgaagttacttgcgacacatccctt 1494  T

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Target: scaffold0111 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 337
Target Start/End: Original strand, 2697 - 2799
Alignment:
Q  235 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 334  Q
    |||| ||||||| ||||||| | ||||| |||||| || |||||| ||||  || ||||||||||||||||  |||||| | |||||  || ||||||||    
T  2697 tgttttggaccgaccaaaaggagctttggcccatttacataggcctaatacaattcaaagcccaaacaccatctttggcaacattacttgctacacaacc 2796  T
Q  335 ctt 337  Q
    |||    
T  2797 ctt 2799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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