View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0759_high_33 (Length: 291)
Name: NF0759_high_33
Description: NF0759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0759_high_33 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 49 - 277
Target Start/End: Original strand, 43293428 - 43293656
Alignment:
| Q |
49 |
atcataatttagcggtgcatattttaaacttgtgttttgaatttgatttacaaggttggaactctagcctgttgattttgatttgatggtcaaaattgtt |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43293428 |
atcataatttagcggtgcatattttaaacttgtgttttgaatttgatttacaaggttggaactctagcctgttgattttgatttgatggtcaaaattgtt |
43293527 |
T |
|
| Q |
149 |
gattgtgtcaaatgtgtgattctttgatcgccaaaaatcaagatcctttttaaaaattgtgctactcgcacttagatttttcattttcttgtaatctatc |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43293528 |
gattgtgtcaaatgtgtgattctttgatcgccaaaaatcaagatcctttttaaaaattgtgctactcgcacttagatttttcattttcttgtaatctatc |
43293627 |
T |
|
| Q |
249 |
tagttggagcatcttctaaggttgaggag |
277 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
43293628 |
tagttggagcatcttctaaggttgaggag |
43293656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 49 - 277
Target Start/End: Complemental strand, 44027533 - 44027305
Alignment:
| Q |
49 |
atcataatttagcggtgcatattttaaacttgtgttttgaatttgatttacaaggttggaactctagcctgttgattttgatttgatggtcaaaattgtt |
148 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44027533 |
atcataatttagcggtgcatattttaaacttgtgttttggatttgatttacaaggttggaactctagcctgttgattttgatttgatggtcaaaattgtt |
44027434 |
T |
|
| Q |
149 |
gattgtgtcaaatgtgtgattctttgatcgccaaaaatcaagatcctttttaaaaattgtgctactcgcacttagatttttcattttcttgtaatctatc |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44027433 |
gattgtgtcaaatgtgtgattctttgatcgccaaaaatcaagatcctttttaaaaattgtgctactcgcacttagatttttcattttcttgtaatctatc |
44027334 |
T |
|
| Q |
249 |
tagttggagcatcttctaaggttgaggag |
277 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
44027333 |
tagttggagcatcttctaaggttgaggag |
44027305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3102 times since January 2019
Visitors: 4805