View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0759_high_4 (Length: 504)
Name: NF0759_high_4
Description: NF0759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0759_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 2 - 476
Target Start/End: Complemental strand, 40467932 - 40467459
Alignment:
| Q |
2 |
gcatctccaaaaatattgaacaaggtgaaaacagtaacaggtaaatgactgctttaattgaagggaaaggaaagttttgcttattgtaagttacctattc |
101 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40467932 |
gcatctccaaaa-tattgaacaaggtgaaaacagtaacaggtaaatgactgctttaattgaagggaaaggaaagttttgcttattgtaagttacctattc |
40467834 |
T |
|
| Q |
102 |
aatcgaaccagttctgagagaaactccacacagattcctctcacgctatcgtttccagcgtgaaataattcaagaacaggtgacaattcaattctatttg |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40467833 |
aatcgaaccagttctgagagaaactccacacagattcctctcacgctatcgtttccagcgtgaaataattcaagaacaggtgacaattcaattctatttg |
40467734 |
T |
|
| Q |
202 |
ctattgagatcttgcaacttttttcagcttgcatacaacacaaaagtatggaaattacaggtctccttccttcggttttgtccaaatacttaactatggc |
301 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40467733 |
ctattgagctcttgcaacttttttcagcttgcatacaacacaaaagtatggaaattacaggtctccttccttcggttttgtccaaatacttaactatggc |
40467634 |
T |
|
| Q |
302 |
tggaattccgtttgctgagataacacttgaagcattgactgacctattatattcatcccctcctattaaaatttgctcaagaattgctatggcggcagct |
401 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40467633 |
tggaattccgtttgctgagataacacttgaagcattgactgacctattatattcatcccctcctattaaaatttgctcaagaattgctatggcggcagct |
40467534 |
T |
|
| Q |
402 |
ttagggtctattgctaactgaaaatcatctatatcctcacttttgttctggatcacttggataagagagggtatt |
476 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40467533 |
ttagggtctattgctaactgaaaatcatctatatcctcacttttgttctggatcacttggataagagagggtatt |
40467459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 153 - 255
Target Start/End: Complemental strand, 144722 - 144620
Alignment:
| Q |
153 |
tttccagcgtgaaataattcaagaacaggtgacaattcaattctatttgctattgagatcttgcaacttttttcagcttgcatacaacacaaaagtatgg |
252 |
Q |
| |
|
|||||||| ||||||||| |||||| ||||||||||||||||| ||||| | || | || ||||||| |||||||||||||||| ||||||||||| |
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| T |
144722 |
tttccagcatgaaataatctgagaacatgtgacaattcaattctaattgctgtcaagctattttaacttttctcagcttgcatacaactcaaaagtatgg |
144623 |
T |
|
| Q |
253 |
aaa |
255 |
Q |
| |
|
||| |
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|
| T |
144622 |
aaa |
144620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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