View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0759_high_55 (Length: 219)
Name: NF0759_high_55
Description: NF0759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0759_high_55 |
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| [»] chr7 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 125; Significance: 1e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 87 - 219
Target Start/End: Complemental strand, 13935721 - 13935589
Alignment:
| Q |
87 |
gagatgaaggagaggtttggtcaacagagagaagaagttcagagaaggtttgtttttagttttccatttttgatttggttctgagaatagggtgaatgac |
186 |
Q |
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| T |
13935721 |
gagaagaaggaaaggtttggtcaacagagagaagaagttcagagaaggtttgtttttagttttccatttttgatttggttctgagaatagggtgaatgac |
13935622 |
T |
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| Q |
187 |
tatggaggaagggagttttatggtgaagaagaa |
219 |
Q |
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| T |
13935621 |
tatggaggaagggagttttatggtgaagaagaa |
13935589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 122 - 219
Target Start/End: Complemental strand, 612812 - 612721
Alignment:
| Q |
122 |
agttcagagaaggtttgtttttagttttccatttttgatttggttctgagaatagggtgaatgactatggaggaagggagttttatggtgaagaagaa |
219 |
Q |
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| T |
612812 |
agttcagagaaggtttgttttgatttttccatttttgatt------tgaggatagaatgaatgactatggaagaatgaagttttatggtgaggaagaa |
612721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 122 - 219
Target Start/End: Original strand, 722474 - 722565
Alignment:
| Q |
122 |
agttcagagaaggtttgtttttagttttccatttttgatttggttctgagaatagggtgaatgactatggaggaagggagttttatggtgaagaagaa |
219 |
Q |
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| T |
722474 |
agttcagagaaggtttgttttgatttttccatttttgatt------tgaggatagaatgaatgactatggaagaatgaagttttatggtgaggaagaa |
722565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 122 - 219
Target Start/End: Complemental strand, 118229 - 118138
Alignment:
| Q |
122 |
agttcagagaaggtttgtttttagttttccatttttgatttggttctgagaatagggtgaatgactatggaggaagggagttttatggtgaagaagaa |
219 |
Q |
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| T |
118229 |
agttcagagaaggtttgttttgatttttccatttttgatt------tgaggatagaatgaatgactatggaagaatgaagttttatggtgaggaagaa |
118138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 122 - 219
Target Start/End: Original strand, 24820962 - 24821053
Alignment:
| Q |
122 |
agttcagagaaggtttgtttttagttttccatttttgatttggttctgagaatagggtgaatgactatggaggaagggagttttatggtgaagaagaa |
219 |
Q |
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| T |
24820962 |
agttcagagaaggtttgttttgatttttccatttttgatt------tgaggatagaatgaatgactatggaagaatgaagttttatggtgaggaagaa |
24821053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 9000929 - 9000889
Alignment:
| Q |
118 |
aagaagttcagagaaggtttgtttttagttttccatttttg |
158 |
Q |
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| T |
9000929 |
aagaagttcagagaaggtttgttttggattttccatttttg |
9000889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 9010094 - 9010054
Alignment:
| Q |
118 |
aagaagttcagagaaggtttgtttttagttttccatttttg |
158 |
Q |
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| T |
9010094 |
aagaagttcagagaaggtttgttttggattttccatttttg |
9010054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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