View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0759_high_8 (Length: 434)
Name: NF0759_high_8
Description: NF0759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0759_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 62 - 426
Target Start/End: Complemental strand, 34971465 - 34971090
Alignment:
| Q |
62 |
catcatcatcataatttattaacattacgtcaattcaacattacat-----------aaatgattgatattcaacaagagtccaatatcacataatttga |
150 |
Q |
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| T |
34971465 |
catcatcatcataatttattaacattacgccaattcaacattacattaacaatacataaatgattgaaattcaacaagagtccaacatcacataatttga |
34971366 |
T |
|
| Q |
151 |
cgacatattacacaacattacatcaaataactgaaactccataacataacatcaaacctttaccgtcaatttgggcatatattcacctttgtgacttcct |
250 |
Q |
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| T |
34971365 |
cgacatattacacaacattacatcaaataactgaaactccataacataacatcaaacctttactgtcaatttgggcatatattcacctttgtgacttcct |
34971266 |
T |
|
| Q |
251 |
tctctttcacatccacctcttgggaatctttccctttaatattcatcactttggcatcattagatttgactatacaatatgccttgcatttagctctaat |
350 |
Q |
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| T |
34971265 |
tctctttcacatccacctcttgggaatctttccctttgatattcatcactttggcatcattagatttgactatgcaatatgccttgtatttagctctaat |
34971166 |
T |
|
| Q |
351 |
attttttaaaatataaaaccgacacactaaagtagtagttttaggaaaaacaatggcaacactattcatctgtgct |
426 |
Q |
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| T |
34971165 |
attttttaaaatataaaaccgacacactaaagtagtagttttaggaaaaataatggcaacactattcatctgtgct |
34971090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 287
Target Start/End: Original strand, 16061310 - 16061350
Alignment:
| Q |
247 |
tccttctctttcacatccacctcttgggaatctttcccttt |
287 |
Q |
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| T |
16061310 |
tccttctctttcccatccaccttttgggaatcttttccttt |
16061350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 247 - 395
Target Start/End: Original strand, 7340506 - 7340654
Alignment:
| Q |
247 |
tccttctctttcacatccacctcttgggaatctttccctttaatattcatcactttggcatcattagatttgactatacaatatgccttgcatttagctc |
346 |
Q |
| |
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||||||||||| |||| ||||||||| |||||||| |||| ||||||| ||||||| |||| |||||||||||||| || | || ||| ||||||||| |
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| T |
7340506 |
tccttctctttgccatcaacctcttggaaatctttctctttgatattcaccactttgacatccttagatttgactatgcagtttgtcttccatttagcta |
7340605 |
T |
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| Q |
347 |
taatattttttaaaatataaaaccgacacactaaagtagtagttttagg |
395 |
Q |
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| | |||||| ||||||| ||||||||||||||||| | ||| |||||| |
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| T |
7340606 |
ttacatttttcaaaatatgaaaccgacacactaaagcaatagatttagg |
7340654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 195
Target Start/End: Complemental strand, 929251 - 929153
Alignment:
| Q |
98 |
aacattacataaatgattgatattcaacaagagtccaatatcacataatttgacgacatattacacaacattacatcaaataac-tgaaactccataac |
195 |
Q |
| |
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||||||||| ||| ||||| ||||||||| | || || || |||||| ||||| |||| ||||||||||||||||||||||| | |||||||||||| |
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| T |
929251 |
aacattacacaaacaattgaaattcaacaacaatctaacattacataaattgactgcatactacacaacattacatcaaataacttaaaactccataac |
929153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 393
Target Start/End: Complemental strand, 35249656 - 35249510
Alignment:
| Q |
247 |
tccttctctttcacatccacctcttgggaatctttccctttaatattcatcactttggcatcattagatttgactatacaatatgccttgcatttagctc |
346 |
Q |
| |
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||||| |||||| | ||||||||||| |||| ||| ||| | | ||||| | ||||||||| ||| |||||||| | || ||| ||||||||||| || |
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| T |
35249656 |
tccttatctttcccgtccacctcttgagaatattttcctgtgacattcaccgttttggcatccttatatttgactcttcagtatatcttgcatttagttc |
35249557 |
T |
|
| Q |
347 |
taatattttttaaaatataaaaccgacacactaaagtagtagtttta |
393 |
Q |
| |
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||| ||||| ||||||||||| |||| | ||| | |||||||||| |
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| T |
35249556 |
taacgtttttagaaatataaaactgacagagtaaggcagtagtttta |
35249510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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